Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5164 ATGGACCTTCTAAGATCAGAGCCATGTTCATCTCATAATTTGAACATCTTATTTTCTGAGAAGAAACAGACAGAAAATGAAGAGAAAAAACATCTCCTTGATTTAAGTCTACCTAGTAACTATCCTTGTGATGATGAGTCAAAGCAAGAACTCAATCTCATAAACTGTTTTGATACAGAAACATCGATGAACTCGTCCTCGGAATCTAATCATGGTAATGAATTAGAGCCTAGGATTTTCTCATGCAACTACTGTCAAAGAAAATTTTATAGTTCACAGGCACTTGGTGGACACCAAAATGCACACAAGAGAGAAAGAACTATGGCAAAAAGAGGACACAAAGCCGCGGTTTCGCTAGATTTTGAACACAGGTACTCAAGTTTGGCTTCTCTACCTCTGCATGGATCCTATAACAGATCATCGTCACTTGGAATTCAGGTGCATTCTTCTATGGTTCACAAACCTTCTTATCAAACACCGTTTTTCGGTTTGTCCCGTTCTCGTGCTCAAAACCAGTGGCAGAAACTGCCTATGTATTCACAACAAGCAATTGGAAATCTTGCATCAGAAACTGATGGATCATCTTTGGCTAGTGTTATTCCTACAAGATCAGGTAGGTTTTCACCAACAAAGGTGCAAGATGGATTAATTGGAGGTTACTGGTTGGGAAATAGTGCTACTACTACATGTTTAAAGACTAAACAAGAGGAGTTGCAGAAACTTGATTTGTCCCTCAAACTCTAA 744 0.3884 MDLLRSEPCSSHNLNILFSEKKQTENEEKKHLLDLSLPSNYPCDDESKQELNLINCFDTETSMNSSSESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGHKAAVSLDFEHRYSSLASLPLHGSYNRSSSLGIQVHSSMVHKPSYQTPFFGLSRSRAQNQWQKLPMYSQQAIGNLASETDGSSLASVIPTRSGRFSPTKVQDGLIGGYWLGNSATTTCLKTKQEELQKLDLSLKL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5164 247 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Tpr7g5164 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Tpr7g5164 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 247 IPR044246 GO:0009788
Tpr7g5164 247 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Tpr7g5164 247 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 247 - -
Tpr7g5164 247 Gene3D Classic Zinc Finger 56 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5164 Tpr-Chr7 59195850 59197138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5164 47 247 C2H2 Transcription Factor Family AT5G25160 44.393 4.30e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g5164 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5164 - - gmx:100812573 266.544