Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5141 ATGTTTAAAACAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGAACAAGAAGAAGAACCAAAACCAAAACCTGGGTCGTATGTTTTCAAATCCCTTGAGCGAGATCCAAAACAACGCCCAACTCAGGCATAGTCGTAGCTGCACCACTACTACTACTACTCACCACCATGGCCCCACCGTACCCGACGACCACAATAACAAGGAAAACGCAGACAATGTTTCTCCTTCTCTTCCAAAGTCATTATCAACAAACACAGACAAACACAACAACAAGATTGTTAATGTTAAGCCTTCCTCGCTACAGTACTGCATGCAAATCAACCAAGATCCTCCTCTTCCTCTTGCTTCTTCTGATTCTTCACACTTTTCCAACTCTTTGAAAATTTGGGACTACTCTGACTCTGAACCTGCTCCTGCTCCTGCTTCCTCCTGGTCCACTTTACCCAACAAGTCTTTGATCTGTAGACCCTTGCCTATTGATATTGGAAGGTGCACATGTGTTATTGTCAAGGAACCAATCCCTCAGGGACTCTCTAATGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTGGCCCACCACAAGCGCCGGACCGGGCGCTCTCACTTCGCCATAGCTCAGAACCTCAAAGGACTACTCTCCAATTTTGATGATACTTTCCTCGGGACAGTAACCGCTAATCTCACCGGCTCAAAATACCACATTTGGGATCAGGGATATCGCCATAAGTCCCGTAGTAAACAACCAAAACCACCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCATATATACCAAACCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAGCATATTAAGGGACTGCCAATGAATTGGGAGGGAAAATTGGACAGAGTCCATCAACTATTCTCAAGGGATCCACTATACAACAAGAGTACAAAGCAATTTGAACTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTTACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGTTGGGAAAATCTACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAAGCGTTTGGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGTGTAGTGTAG 1233 0.4323 MFKTKKEEEEEEEEEEEMNKKKNQNQNLGRMFSNPLSEIQNNAQLRHSRSCTTTTTTHHHGPTVPDDHNNKENADNVSPSLPKSLSTNTDKHNNKIVNVKPSSLQYCMQINQDPPLPLASSDSSHFSNSLKIWDYSDSEPAPAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPIPQGLSNGTFFSLYTYEGQGRQNRKLAVAHHKRRTGRSHFAIAQNLKGLLSNFDDTFLGTVTANLTGSKYHIWDQGYRHKSRSKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKLDRVHQLFSRDPLYNKSTKQFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRLGKSTFVMDYRYPLTGYQAFGICLASIDAKLCCVV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5141 410 Pfam Tub family 159 403 IPR000007 -
Tpr7g5141 410 MobiDBLite consensus disorder prediction 74 95 - -
Tpr7g5141 410 MobiDBLite consensus disorder prediction 44 60 - -
Tpr7g5141 410 PRINTS Tubby superfamily signature 233 257 IPR000007 -
Tpr7g5141 410 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Tpr7g5141 410 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Tpr7g5141 410 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Tpr7g5141 410 PANTHER TUBBY-RELATED 22 408 - -
Tpr7g5141 410 Coils Coil 1 31 - -
Tpr7g5141 410 Gene3D Tubby Protein; Chain A 150 409 IPR025659 -
Tpr7g5141 410 PANTHER TUBBY-LIKE PROTEIN 8 22 408 - -
Tpr7g5141 410 MobiDBLite consensus disorder prediction 1 28 - -
Tpr7g5141 410 SUPERFAMILY Tubby C-terminal domain-like 145 408 IPR025659 -
Tpr7g5141 410 MobiDBLite consensus disorder prediction 44 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5141 Tpr-Chr7 59018785 59021222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5141 99 303 TUB Transcription Factor Family AT1G16070 53.333 2.50e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr7g5141 Tub 1e-38 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5141 K19600 - gmx:100803500 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g5141 7 59018785 59021222 Tpr7g5141 7 59018785 59021222 ECH