LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g5124	ATGGGTTCTGTATCTGCAGAAGACAAGATGGACACTGATTTCGATGAAGAGACACCTTTCAGTTCTACTTCTTCTTCTACTTCAGCTCCATCTAAACAACAACCACACACTTTTCATTTCGATTCTTCTTCTTCTTCAGTTACTTTGCCTAAATCATCATCATCATCTTCTACTACTTCTTTCTTCAATCATTCTCGGACAAGACGAATCAGCAGGAGTATTTATCTTGTCTTAATCAAAGCTAAGATCAACATCTTGCTACCATTTGGTCCCTTGGCCATCTTCCTACATTATTTCACCGGAAAACATGTTTGGGTTTTTTTCTTCGCTTTATTGGGTATTGCTCCTTTGGCTGAACGCCTTGGTTATGCTACAGAACAGCTTGCGTTTTACACGGGACCAACAGGTATGTATGTACTATATTTGCATTGTATTTCAAACATGGAATGGAATGGTACCACTTTTTATGACTTTCTTCATTTACTACTGTTTTCATTTACTACTGTTGTTATATGTATAGTTGGGGGTTTGCTTAATGCCACGTTTGGAAATGCAACTGAAATGATTATATCTATTTACGCCTTGAAAAGCGATATGATTAGAGTCGTTCAGCAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTTGTTCTTGGTTGTGCATTCTTTACTGGTGGGATTGTTCACTACAAAAAAGTTCAGGTTTTCAATAAGGCAGCTGCTGTGGTTAATTCAGGGTTGCTCTTGATGGCTGTAATGGGAATATTATTTCCTGCTGTGCTTCACTTTACTCACTCAGAGGTTCATCTTGGGAAGTCCGTCTTATCTCTATCCAGATTTAGCAGCTGCATAATGCTAGTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACAAAATTTTTATAGTCCAGTTGACCAGGAAGTAGATACATGTGAAAACTCTGACGAGGAGGAAGAACTTGAGTTAACTAAATGGGAGGCGATAATCTGGCTTGGTATTTTGACAGTATGGGTTTCAGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAATCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATAGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTAAAGGACAAGCTAGATATCACAATTGGAGTTGCTATTGGATCATCAACCCAAATATCGATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGATATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGGACGTCAAACTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACACGTAGACCCTAAGAGTGGTGATGACTAA	1455	0.3897	MGSVSAEDKMDTDFDEETPFSSTSSSTSAPSKQQPHTFHFDSSSSSVTLPKSSSSSSTTSFFNHSRTRRISRSIYLVLIKAKINILLPFGPLAIFLHYFTGKHVWVFFFALLGIAPLAERLGYATEQLAFYTGPTGMYVLYLHCISNMEWNGTTFYDFLHLLLFSFTTVVICIVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLVAYASYLFFQLRSQQNFYSPVDQEVDTCENSDEEEELELTKWEAIIWLGILTVWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKDMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD*	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g5124	484	TIGRFAM	caca2: calcium/proton exchanger	174	474	-	-
	Tpr7g5124	484	Gene3D	-	169	312	IPR044880	-
	Tpr7g5124	484	Gene3D	-	318	475	IPR044880	-
	Tpr7g5124	484	PANTHER	VACUOLAR CATION/PROTON EXCHANGER	173	481	-	-
	Tpr7g5124	484	PANTHER	VACUOLAR CATION/PROTON EXCHANGER	6	136	-	-
	Tpr7g5124	484	TIGRFAM	cax: calcium/proton exchanger	171	474	IPR004798	GO:0006816\|GO:0015369
	Tpr7g5124	484	MobiDBLite	consensus disorder prediction	17	44	-	-
	Tpr7g5124	484	MobiDBLite	consensus disorder prediction	1	44	-	-
	Tpr7g5124	484	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	173	481	IPR004713	GO:0006812\|GO:0008324\|GO:0016021
	Tpr7g5124	484	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	6	136	IPR004713	GO:0006812\|GO:0008324\|GO:0016021
	Tpr7g5124	484	Pfam	Sodium/calcium exchanger protein	103	298	IPR004837	GO:0016021\|GO:0055085
	Tpr7g5124	484	Pfam	Sodium/calcium exchanger protein	332	471	IPR004837	GO:0016021\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g5124	Tpr-Chr7	58871308	58881087	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g5124	56	479	Antiporters	AT3G13320	66.822	0.0	556

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g5124	K07300		-	gmx:100806000	663.299