Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5121 ATGCAATTAGCTTCAAACACTGACAAGGATGATGATGATGATGAATGTTCAGAAAGCCAACCCATCTTGAATCACCAAGACTCCTCCTTTTCCTGTGAAATTATTCCTGCCAACACTGATGATGATGATGATGATGATATAGAGAATGTTCCCGTTGACGACTCTTCTCATCTTCTAAATGCAGATCACCCGCAATGCCGAATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCTTGCCATTGCAAAGGTACCCAAAAGTATGTCCATAGATCATGTCTGGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGAGCAAATGTCCCAAAAGATAGGTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTATTTACAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATATGGGTTTTATACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCGAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 762 0.4108 MQLASNTDKDDDDDECSESQPILNHQDSSFSCEIIPANTDDDDDDDIENVPVDDSSHLLNADHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5121 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 118 IPR013083 -
Tpr7g5121 253 MobiDBLite consensus disorder prediction 1 30 - -
Tpr7g5121 253 ProSiteProfiles Zinc finger RING-CH-type profile. 58 120 IPR011016 GO:0008270
Tpr7g5121 253 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 252 - -
Tpr7g5121 253 PANTHER OS02G0132300 PROTEIN 2 252 - -
Tpr7g5121 253 Pfam RING-variant domain 66 113 IPR011016 GO:0008270
Tpr7g5121 253 CDD RING_CH-C4HC3_MARCH 66 114 - -
Tpr7g5121 253 SMART ringv_2 65 114 IPR011016 GO:0008270
Tpr7g5121 253 SUPERFAMILY RING/U-box 61 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5121 Tpr-Chr7 58839751 58842810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5121 1 212 C3H Transcription Factor Family AT1G50440 61.290 2.16e-88 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5121 - - gmx:100789593 462.996