Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5102 ATGGAAAATGAAAAGGGATTATGCAATGGGAAGGCTAATGATGATGGCCTTTCTTCTGGATCAGAGCTCAAAGGTGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCTAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTTAAGGAGGAGTATGGAATTGAGGCTTGGACTTTTACTCGGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTGAAGCCAACAAAGCAATTTTTTAGCCAATTAACACTGCCGATTTGTTTAAGTTAA 408 0.4142 MENEKGLCNGKANDDGLSSGSELKGGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVIHPIHDQTFYLTLEHKRKLKEEYGIEAWTFTRKLGDAVFIPAGCPHQVRNLKPTKQFFSQLTLPICLS* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5102 135 SMART cupin_9 1 135 IPR003347 -
Tpr7g5102 135 Pfam JmjC domain, hydroxylase 32 121 IPR003347 -
Tpr7g5102 135 ProSiteProfiles JmjC domain profile. 1 135 IPR003347 -
Tpr7g5102 135 SUPERFAMILY Clavaminate synthase-like 33 121 - -
Tpr7g5102 135 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 29 119 - -
Tpr7g5102 135 Gene3D Cupin 1 134 - -
Tpr7g5102 135 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 29 119 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5102 Tpr-Chr7 58570494 58573544 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr7g5102 JmjC 2.9e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5102 K15601 - gmx:100797799 204.912