Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5101 ATGCTAGGAGATGACGTTTTCATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACACATTGGTGAATGCTTCCGTTTGACAGAGGAATGTTGCAAGCTTCCGGTAAATCACAAATCAGCTGAGGACAAATTTAAGGTGAAGAAAATTGTCATACAGGCTATGCTTGATATTAAAGTATGCATGACGGCAATCACCGAAGGCATGACAGCAAATCACTAA 264 0.4167 MLGDDVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEECCKLPVNHKSAEDKFKVKKIVIQAMLDIKVCMTAITEGMTANH* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5101 87 Gene3D Cupin 1 55 - -
Tpr7g5101 87 ProSiteProfiles JmjC domain profile. 1 46 IPR003347 -
Tpr7g5101 87 SUPERFAMILY Clavaminate synthase-like 3 67 - -
Tpr7g5101 87 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 70 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5101 Tpr-Chr7 58554194 58561055 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr7g5101 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5101 K15601 - gmx:100780803 113.62