Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5091 ATGGCCAAAGTTTGTAAGAAGTTTGATTGTGTTTCTGAGATTTTACCAAACAAGGATTGTGTTCGAATCAAGGTGCGTGTTCTTCGTATCTGGAAGACGTCTTCCTTCCTCAATCCTTCTGATGTCAATTCAATTGAGATGGTTTTGGTTGATGAAAAGGGTGGAAAGATTCATGCCTCTGTTAGGAAGCAGTTTTTGTATATGTTTGAGTCTAAAATTGAAGAAGGACAAGTGTATCAGATGTCCTATTTTTCCGTTGTTCCTCAGACTGGTTTCTACAGAACTACTCTACATCCATACAAGCTATTATTCCAAATTAAGACAAAGGTTGTAGCTGTTAAGAGTTCTGATATATCTCATTATGGTCTCACATTGACAAGTTTGGCTGAAGTTTGTAGTCATGTCCATGATTATGAATTTTTAGTTGATGTGATGGGTTTGTTATCTGGGATTTCTGCTGAGAGGGAATATGTGAGGGATGGAAATGTTACAAAGATGGTTGTGATAGAGTTGACTGATGCTAGTGGGAAATGTGAATGTGCTTTGTTTGGGGATTATGTTGATGAGTTAAACAAGAAACTGGGCAAGACATCTGGAGGTCTCCCTGTGGTTGTAATTCAGTTTGCAAAGGTTAAGATATTTAGAGACCAAGCATCCATTCAAAATGTCATCAACACTACAAAGATATTTGTGAATCCTGATATCCCTGAAGCTGATGCATTTAAGGATAGCATTGGTGTGCATGGTATTATGTTGGATGCCACTGTTGCTGTGATTGGGGCTCGTGCCAAACCTGCTATGGATGAAGAATTTCTGAGGATGTATCCAAAAAAAACTGTATCTGAACTAAGTGAAATGGAAGAGGAAGGGGTTTTTGCTGTTTTTGGGGTGGTTAGTTCTATTGTTCCTGGGGAGGATTGGTGGTATCCTGCATGCAAGTGTCATAAGTCTGTTATTGCTGATTCTGGGGCTTACTTTTGCAATGGATGCAACAAGCATGTTTTTCAAGTTGTTCCAAGGTTTAGGGTGAAGATTGCTGTGTCTGATGGTGCTTCTACTTGTGTTTTTGTTCTATTTGATACTGATATGAGTTACATTTTAGAGAAATCTTGTGCTCATTTCGTTGGAAGATCCAAGGCTGCTCCTGATGATGGTTCATACCCTGCTGAGTTTGAGCTTCTCGTCGGTAAGAAGATGTTGTTTATAATTGATAAGGGATTGAAGGTTACTAGGATTGATGATGGAACTTTTAGAGTGAAGCGTGTGTGCATGGATTCTAAGATTATTGGGAGTTTTGTTGCTGAGGGACCATATCTTACTCCTGTTAGGAATGTTTCTCCAGTCATTAATCTTGATTCTGATGCTGCATCTCCTGATGTTGATTTTGTTGAAGAAACCCAGCCACTTGCACTCATGAAAAACACTGCTGTTACACCTCCTGGCCTAGGTTATAGTCCAGTTAAAAATGACATTGTGGTGAATACTGTGAAAAGGTGCCTGTCCAGTTCTTTTGATAGTGTTCAACCAGATGAAAAGAAGAAGCGTCTGAGGAAGATCAAGATCGAGAAAGAATGA 1575 0.3937 MAKVCKKFDCVSEILPNKDCVRIKVRVLRIWKTSSFLNPSDVNSIEMVLVDEKGGKIHASVRKQFLYMFESKIEEGQVYQMSYFSVVPQTGFYRTTLHPYKLLFQIKTKVVAVKSSDISHYGLTLTSLAEVCSHVHDYEFLVDVMGLLSGISAEREYVRDGNVTKMVVIELTDASGKCECALFGDYVDELNKKLGKTSGGLPVVVIQFAKVKIFRDQASIQNVINTTKIFVNPDIPEADAFKDSIGVHGIMLDATVAVIGARAKPAMDEEFLRMYPKKTVSELSEMEEEGVFAVFGVVSSIVPGEDWWYPACKCHKSVIADSGAYFCNGCNKHVFQVVPRFRVKIAVSDGASTCVFVLFDTDMSYILEKSCAHFVGRSKAAPDDGSYPAEFELLVGKKMLFIIDKGLKVTRIDDGTFRVKRVCMDSKIIGSFVAEGPYLTPVRNVSPVINLDSDAASPDVDFVEETQPLALMKNTAVTPPGLGYSPVKNDIVVNTVKRCLSSSFDSVQPDEKKKRLRKIKIEKE* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5091 524 SUPERFAMILY Nucleic acid-binding proteins 275 404 IPR012340 -
Tpr7g5091 524 Gene3D - 7 112 IPR012340 -
Tpr7g5091 524 CDD RPA1_DBD_B_like 143 244 - -
Tpr7g5091 524 Gene3D - 268 424 IPR012340 -
Tpr7g5091 524 CDD RPA1_DBD_C 277 403 IPR013955 -
Tpr7g5091 524 SUPERFAMILY Nucleic acid-binding proteins 125 253 IPR012340 -
Tpr7g5091 524 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Tpr7g5091 524 Gene3D - 116 249 IPR012340 -
Tpr7g5091 524 Pfam Replication factor-A C terminal domain 293 374 IPR013955 -
Tpr7g5091 524 PANTHER REPLICATION FACTOR A 1, RFA1 20 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g5091 524 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 375 - -
Tpr7g5091 524 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Tpr7g5091 524 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5091 Tpr-Chr7 58458360 58461012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5091 16 367 Core DNA Replication Machinery Family AT5G08020 24.185 3.01e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5091 - - mtr:MTR_8g062030 491.886