Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5082 ATGCAATTAGCTTCAAACACTGACAAGGATGATGATGATGATGAATGTTCAGAAAGCCAACCCATCTTGAATCACCAAGACTCCTCCTCCTTTTCCTGTGAAATTATTCCTGCCAACACTGATGATGATGATGATGATGATGATGATATAGAGAATGTTCCCGTTGACGACTCTTCTCATCTTCTAAATGCAGATCACCCGCAATGCCGAATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCTTGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGATCATGTCTGGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGAGCAAATGTCCCAAAAGATCGGTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTATTTACAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCGAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 771 0.4125 MQLASNTDKDDDDDECSESQPILNHQDSSSFSCEIIPANTDDDDDDDDDIENVPVDDSSHLLNADHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5082 256 SMART ringv_2 68 117 IPR011016 GO:0008270
Tpr7g5082 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 121 IPR013083 -
Tpr7g5082 256 CDD RING_CH-C4HC3_MARCH 69 117 - -
Tpr7g5082 256 MobiDBLite consensus disorder prediction 1 47 - -
Tpr7g5082 256 ProSiteProfiles Zinc finger RING-CH-type profile. 61 123 IPR011016 GO:0008270
Tpr7g5082 256 MobiDBLite consensus disorder prediction 21 36 - -
Tpr7g5082 256 PANTHER OS02G0132300 PROTEIN 2 255 - -
Tpr7g5082 256 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 255 - -
Tpr7g5082 256 Pfam RING-variant domain 69 116 IPR011016 GO:0008270
Tpr7g5082 256 SUPERFAMILY RING/U-box 64 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5082 Tpr-Chr7 58328964 58332876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5082 1 215 C3H Transcription Factor Family AT1G50440 61.468 2.41e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5082 - - gmx:100789593 457.218