Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5078 ATGGGTTCTGTATCTGCAGAAGACAAGATGGACACTGATTTCGATGAAGAGACACCTTTCAGTTCTACTTCTTCTACTTCTTCAGCTCCATCTAAACAACAACCACACACTTTTCATTTCGATTCTTCTTCTTCTTCTTCAGTTACTTTGCCTAAATCATCATCTTCTACTACTTCTTTCTTCAATCATTCTCGGACAAGACGAATCAGCAGGAGTATTTATCTTGTCTTAATCAAAGCTAAGATCAACATCTTGCTACCATTTGGTCCCTTGGCCATCTTCCTACATTATTTCACCGGAAAACATGTTTGGGTTTTTTTCTTCGCTTTATTGGGTATTGCTCCTTTGGCTGAACGCCTTGGTTATGCTACAGAACAGCTTGCGTTTTACACGGGACCAACAGTTGGGGGTTTGCTTAATGCCACGTTTGGAAATGCAACTGAAATGATTATATCTATTTACGCCTTGAAAAGCGATATGATTAGAGTCGTTCAGCAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTTGTTCTTGGTTGTGCATTCTTTACTGGTGGGATTGTCCACTACAAAAAAGTTCAGGTTTTCAATAAGGCAGCTGCTGTGGTTAATTCAGGGTTGCTCTTGATGGCTGTAATGGGAATATTATTTCCTGCTGTGCTTCACTTTACTCACTCAGAGGTTCATCTTGGGAAGTCCGTCTTATCTCTATCCAGATTTAGCAGCTGCATAATGCTAGTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACAAAATTTTTATAGTCCAGTTGACCAGGAAGTAGATACATGTGAAAACTCTGACGAGGAGGAAGAACTTGAGTTAACTAAATGGGAAGCGATAATCTGGCTTGGTATTTTGACAGTATGGGTTTCGGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAATCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATAGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTAAAGGACAAGCTAGATATCACAATTGGAGTTGCTATTGGATCATCAACCCAAATATCGATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGATATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGGACGTCAAACTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACACGTAGACCCTAAGAGTGGTGATGACTAA 1338 0.3999 MGSVSAEDKMDTDFDEETPFSSTSSTSSAPSKQQPHTFHFDSSSSSSVTLPKSSSSTTSFFNHSRTRRISRSIYLVLIKAKINILLPFGPLAIFLHYFTGKHVWVFFFALLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLVAYASYLFFQLRSQQNFYSPVDQEVDTCENSDEEEELELTKWEAIIWLGILTVWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKDMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5078 445 TIGRFAM caca2: calcium/proton exchanger 76 435 - -
Tpr7g5078 445 Pfam Sodium/calcium exchanger protein 293 432 IPR004837 GO:0016021|GO:0055085
Tpr7g5078 445 Pfam Sodium/calcium exchanger protein 102 259 IPR004837 GO:0016021|GO:0055085
Tpr7g5078 445 PANTHER VACUOLAR CATION/PROTON EXCHANGER 6 442 - -
Tpr7g5078 445 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 6 442 IPR004713 GO:0006812|GO:0008324|GO:0016021
Tpr7g5078 445 MobiDBLite consensus disorder prediction 17 44 - -
Tpr7g5078 445 MobiDBLite consensus disorder prediction 1 44 - -
Tpr7g5078 445 Gene3D - 279 436 IPR044880 -
Tpr7g5078 445 Gene3D - 133 273 IPR044880 -
Tpr7g5078 445 TIGRFAM cax: calcium/proton exchanger 85 435 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5078 Tpr-Chr7 58289648 58298460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5078 41 440 Antiporters AT3G13320 71.287 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5078 K07300 - gmx:100806000 683.33