Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5072 ATGAAGCTCACTGTGAAAACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCTTCTGATTCTATAATGGCAGTAAAAAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCTTGCGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTATCAGATAATAAAGTCTCCCAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAATCCTTGGGATCTGCTGGAACTTCATCTACTCTTCAGACCCCTACCAATCCACCTACAACTCTACCAACACCAGATTCAACACCTCTAGTACAAACGCAATCTGCAAACAACAATGCATCTGCACCACTTGTCTCAACTACAACAAATCTTACTACAGAGACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGCTAGTAATCTTGACCACACTATTCAACAAATTATGGACATGGGTGGCGGCACCTGGGATAGAGATACCGTTAATCGTGCTCTGCATGCAGCTTTCAATAATCCAGAGCGTGCTGTCGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAGTTGCTGTACCGGCTGCTCAATACCCAAGTAATCAAACTGAAACAGCTGGGGTCACTTCCGGAGTTGTTCCGGGGGTCCCTAACTCAGCTCCCTTGAATATGTTTCCACAGGAGACAGCTTCTGGCACTGGTGCTGGCGCTGGATCGCTTGATTTCCTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCAGAAATTCTCCAGCCTGTACTTCAAGAGCTCGGAAAGCAAAATCCCGGTCTCTTGAGACTAATTGATGAGAATCATTCTGAGTTTCTTCAGTTGATAAATGAGCCCATGGATGGTTCTGATGGGGATAATTTTGACCAGCCTGAGCAAGACTTGCCTCATGCCATCAATGTGACGCCAGCTGAGCAGGAAGCAATTGGAAGGCTAGAGGCTATGGGATTCGATAGAGCCTCTGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTCGAGGATTAA 1107 0.4453 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKVSQDGFLVVMLSKSKSLGSAGTSSTLQTPTNPPTTLPTPDSTPLVQTQSANNNASAPLVSTTTNLTTETYGQAASNLVAASNLDHTIQQIMDMGGGTWDRDTVNRALHAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNQTETAGVTSGVVPGVPNSAPLNMFPQETASGTGAGAGSLDFLRNNPQFQALRTMVQSNPEILQPVLQELGKQNPGLLRLIDENHSEFLQLINEPMDGSDGDNFDQPEQDLPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5072 368 Gene3D - 139 189 - -
Tpr7g5072 368 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 367 - -
Tpr7g5072 368 SUPERFAMILY UBA-like 302 365 IPR009060 GO:0005515
Tpr7g5072 368 Pfam UBA/TS-N domain 149 184 IPR015940 -
Tpr7g5072 368 Pfam UBA/TS-N domain 324 359 IPR015940 -
Tpr7g5072 368 SMART ubq_7 1 75 IPR000626 GO:0005515
Tpr7g5072 368 TIGRFAM rad23: UV excision repair protein Rad23 1 367 IPR004806 GO:0006289
Tpr7g5072 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 322 362 IPR015940 -
Tpr7g5072 368 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Tpr7g5072 368 PRINTS DNA repair protein Rad23 signature 269 291 IPR004806 GO:0006289
Tpr7g5072 368 PRINTS DNA repair protein Rad23 signature 318 334 IPR004806 GO:0006289
Tpr7g5072 368 PRINTS DNA repair protein Rad23 signature 335 349 IPR004806 GO:0006289
Tpr7g5072 368 PRINTS DNA repair protein Rad23 signature 350 365 IPR004806 GO:0006289
Tpr7g5072 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 145 187 IPR015940 -
Tpr7g5072 368 SMART CBM 241 284 IPR006636 -
Tpr7g5072 368 SUPERFAMILY XPC-binding domain 240 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tpr7g5072 368 SMART uba_6 146 186 IPR015940 -
Tpr7g5072 368 SMART uba_6 324 361 IPR015940 -
Tpr7g5072 368 Pfam XPC-binding domain 243 298 IPR015360 GO:0003684|GO:0006289|GO:0043161
Tpr7g5072 368 Gene3D - 232 299 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tpr7g5072 368 SUPERFAMILY UBA-like 144 194 IPR009060 GO:0005515
Tpr7g5072 368 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Tpr7g5072 368 MobiDBLite consensus disorder prediction 81 106 - -
Tpr7g5072 368 Gene3D - 1 80 - -
Tpr7g5072 368 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 367 - -
Tpr7g5072 368 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Tpr7g5072 368 CDD Ubl_Rad23 1 74 - -
Tpr7g5072 368 Gene3D - 315 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5072 Tpr-Chr7 58247072 58250801 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5072 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 3.16e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5072 K10839 - gmx:100804038 573.163