Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5071 ATGTTTAAAACAAAGAAAGAAGAAGAAGAAGAAGAAATGAACAAGAAGAAGAACCAAAACCAAAACCAAAACCTGGGTCGTATGTTTTCAAATCCCTTGAGCGAGATCCAAAACAACGCCCAACTCAGGCATAGTCGTAGCTGCGCCACTACTACTACTACTCACCATGGTCCCACCGACCACAATAACAAGGAAAACGCAGACAATGTTTCTCCTTCTCTTCCAAAGTCATTATCAACAAACACAGACAAACACAACAACAAGTTTGTTAATGTTAAGCCTTCCTCGCTACAGTACTGCATGCAAATCAACCAAGATCCTCCTCTTCCTCTTGCTTCTTCTGATTCTTCCCACTTTTCCAACTCTTTGAAAATTTGGGACTACTCTGACTCTGAACCTGCTCCTGCTCCTGCTTCCTCCTGGTCCACTTTACCCAACAAGTCTTTGATCTGTAGACCCTTGCCTATTGATATTGGAAGGTGCACATGTGTTATTGTCAAGGAACCAATCCCTCAGGGACTCTCTAATGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTGGCCCACCACAAGCGCCGGACCGGGCGCTCTCACTTCGCCATAGCTCAGAACCTCAAAGGACTACTCTCCAATTTTGATGATACTTTCCTCGGGACAGTAACCGCTAATCTCACCGGCTCAAAATACCACATTTGGGATCAGGGATATCGCCATAAGTCCCATAGTAAACAACCAAAACCACCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCATATATACCAAACCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAGCATATTAAGGGACTGCCAATGAATTGGGAGGGAAAATTGGACAGAGTCCATCAACTATTCTCAAGGGATCCACTCTACAACAAGAGTACAAAGCAATTTGAACTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTTACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGTTGGGAAAATCTACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAAGCGTTTGGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGTGTAGTGTAG 1212 0.4315 MFKTKKEEEEEEMNKKKNQNQNQNLGRMFSNPLSEIQNNAQLRHSRSCATTTTTHHGPTDHNNKENADNVSPSLPKSLSTNTDKHNNKFVNVKPSSLQYCMQINQDPPLPLASSDSSHFSNSLKIWDYSDSEPAPAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPIPQGLSNGTFFSLYTYEGQGRQNRKLAVAHHKRRTGRSHFAIAQNLKGLLSNFDDTFLGTVTANLTGSKYHIWDQGYRHKSHSKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKLDRVHQLFSRDPLYNKSTKQFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRLGKSTFVMDYRYPLTGYQAFGICLASIDAKLCCVV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5071 403 MobiDBLite consensus disorder prediction 1 24 - -
Tpr7g5071 403 MobiDBLite consensus disorder prediction 41 87 - -
Tpr7g5071 403 PANTHER TUBBY-LIKE PROTEIN 8 16 401 - -
Tpr7g5071 403 Pfam Tub family 152 396 IPR000007 -
Tpr7g5071 403 PANTHER TUBBY-RELATED 16 401 - -
Tpr7g5071 403 PRINTS Tubby superfamily signature 226 250 IPR000007 -
Tpr7g5071 403 PRINTS Tubby superfamily signature 316 333 IPR000007 -
Tpr7g5071 403 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Tpr7g5071 403 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Tpr7g5071 403 MobiDBLite consensus disorder prediction 41 57 - -
Tpr7g5071 403 MobiDBLite consensus disorder prediction 64 87 - -
Tpr7g5071 403 SUPERFAMILY Tubby C-terminal domain-like 138 401 IPR025659 -
Tpr7g5071 403 MobiDBLite consensus disorder prediction 1 17 - -
Tpr7g5071 403 Coils Coil 3 26 - -
Tpr7g5071 403 Gene3D Tubby Protein; Chain A 143 402 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5071 Tpr-Chr7 58243904 58246304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5071 54 296 TUB Transcription Factor Family AT1G16070 45.421 9.50e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr7g5071 Tub 1e-38 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5071 K19600 - gmx:100803500 445.277