Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5041 ATGGACCAATCTTGGGAAAATTGGCCTCTTCATTCGGAATTTGGTGATGATGAAGAATTTTTGAGAGACATAATATTGCAGCCACCTGTTACATATTCTGGAAGCAGTTTATCATCATCTTCTAATGAGATGGACGGTTCAGATTGGTCAGGAAAAAAGGTTCATAACCCTTCAACAACGTTGTCAAGTAACACTCCTAGTCCTAGGACATTTATTTTGTCTTTTGATAAATCAACAATAATACCAGCTACTACTACACAAGATGAAGATGAAGATGAAGAAAAAGAAGAACCACGAATTAAAAGTAGAAGCTGTGGAAAATCTAATAATGATAATAAGAGGAGTTTGGAATTACCAAAAGTGAAAGTGAGTAGTAGTACAAAAAGTGGAAAAAAAAGTAGAAGTGATTCTCAGTGTATGGATCACATTATGGCTGAGAGAAAAAGGAGATTGGAAATAGCACAAAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGACGGACAAGACCTCTATACTTTGCGAAGCAATTAATTATGTGAAGGTACTTCAAGAACGTGTGAAGGAGCTAGAGGAACCAAACAAGAAGAGCAAAGAATCAACAATAAACCTAAAAACAAATGAGAAATCAGTCGTTGATGTCAAAGCAAGAGTTTTGGGAAATGAGGTACTCATTGAGATGCATTGTGAGAAGGAAAATGGCATTGAGCTCAAAATATTGAACCATCTTCAAAATCTTCATTTGATTGTCACTGCAAGCACTGTATTTCCTTTTGGGAATTCAAATCTTGGCTTTACTATTGTTGCTCAGATGGGTGATGGGTACAAATTGACAGTGGATGATCTGGTGAAAACCCTACAGCAAGTGCCTTTGATTAATATGAGGAGGAGGAAAGAGACCATCAATAAATTAGAATTCGGTCATAAGTTACAGGAAATGGATATTGAAAATTGGTTGGAGATGTGCCAAGAAGAAGACTACCTTGGTGACTACATGGTACATGATCAATTGTCTTTAGAAGCCCCGGCCATGGCCGGGGCAGCCACAGAAAATACACTACAAGAAATTTGCCACATACCATCGGTAGTTTCTAGTGAGATGACGAAGCAGCTACCTCATCCGTCCACATCCTCTAAAACTTGCACTGTCCCTTTTGATAATTCTGCAGTTATACCATTAAAATCATCTGTGATATCGTCCAAACCACCGCGTCCTCCATGTTCAGCAAAAAAGAGGACTTCTGAGAAACTAAAGAGCTCAGAAGCAAAAGCAATTACGAAAGAAGGAGAAAAGAAGATTATGGTAGAGAGGAAAAGGAGACTTGAACTCGCACACATGTTCAAAGAGCTTTCAGCTACAATTCCTCGCTTCAAGAAGACAGACAAAGCTTCTATAGTTATGGGAGCTATCAATCACGTGGAACAACTCAAAAAACGAGTGAAGGAGTTAGAACAGCAAAACAATAGAGGCAAAGAACCTATAACACTCCACAATGAATTGCTCCCTTATGTCAAAGCAAAAGTGTTGGACAAAAATATACTCATTTACATCAATTGTGAGAAACAAAATGGCATTGAACTCAACATATTAGAAATGCTTGAAAATCTTCATTTGTTTGTCACCAGCACCAGCGTATTGCCGTTTGGTAGTTCAACTCTTGGCATCACTATCATTGCCAAGATGGACGATGCATACAAAATGAAGATGGTCGATCTAGTGGATAACATAAGGCAATTGTTGTCGAATGGTTCTGCAAATCATCCGACATGA 1779 0.3834 MDQSWENWPLHSEFGDDEEFLRDIILQPPVTYSGSSLSSSSNEMDGSDWSGKKVHNPSTTLSSNTPSPRTFILSFDKSTIIPATTTQDEDEDEEKEEPRIKSRSCGKSNNDNKRSLELPKVKVSSSTKSGKKSRSDSQCMDHIMAERKRRLEIAQKFIALSATIPGLKKTDKTSILCEAINYVKVLQERVKELEEPNKKSKESTINLKTNEKSVVDVKARVLGNEVLIEMHCEKENGIELKILNHLQNLHLIVTASTVFPFGNSNLGFTIVAQMGDGYKLTVDDLVKTLQQVPLINMRRRKETINKLEFGHKLQEMDIENWLEMCQEEDYLGDYMVHDQLSLEAPAMAGAATENTLQEICHIPSVVSSEMTKQLPHPSTSSKTCTVPFDNSAVIPLKSSVISSKPPRPPCSAKKRTSEKLKSSEAKAITKEGEKKIMVERKRRLELAHMFKELSATIPRFKKTDKASIVMGAINHVEQLKKRVKELEQQNNRGKEPITLHNELLPYVKAKVLDKNILIYINCEKQNGIELNILEMLENLHLFVTSTSVLPFGSSTLGITIIAKMDDAYKMKMVDLVDNIRQLLSNGSANHPT* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5041 592 Pfam Helix-loop-helix DNA-binding domain 434 479 IPR011598 GO:0046983
Tpr7g5041 592 Pfam Helix-loop-helix DNA-binding domain 139 187 IPR011598 GO:0046983
Tpr7g5041 592 Gene3D - 422 495 IPR036638 GO:0046983
Tpr7g5041 592 Gene3D - 128 203 IPR036638 GO:0046983
Tpr7g5041 592 SMART finulus 143 192 IPR011598 GO:0046983
Tpr7g5041 592 SMART finulus 436 485 IPR011598 GO:0046983
Tpr7g5041 592 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Tpr7g5041 592 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 430 479 IPR011598 GO:0046983
Tpr7g5041 592 MobiDBLite consensus disorder prediction 119 133 - -
Tpr7g5041 592 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 500 IPR036638 GO:0046983
Tpr7g5041 592 MobiDBLite consensus disorder prediction 96 118 - -
Tpr7g5041 592 MobiDBLite consensus disorder prediction 82 140 - -
Tpr7g5041 592 PANTHER BHLH TRANSCRIPTION FACTOR 1 294 - -
Tpr7g5041 592 PANTHER BHLH TRANSCRIPTION FACTOR 315 500 - -
Tpr7g5041 592 PANTHER BHLH TRANSCRIPTION FACTOR 500 586 - -
Tpr7g5041 592 Coils Coil 469 496 - -
Tpr7g5041 592 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 199 IPR036638 GO:0046983
Tpr7g5041 592 MobiDBLite consensus disorder prediction 399 424 - -
Tpr7g5041 592 MobiDBLite consensus disorder prediction 31 68 - -
Tpr7g5041 592 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 294 - -
Tpr7g5041 592 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 315 500 - -
Tpr7g5041 592 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 500 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5041 Tpr-Chr7 58006330 58015766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g5041 432 585 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.640 3.62e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g5041 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5041 - - cam:101501528 278.87