Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g4977 | ATGGAAGCTGAAAGGTACTCTGCAAAGTTCAAAACCCAGCTATGCATAAAATTCATGCAAGGAACTTGTGCTCATGGAGCAAATTGCAACTATGCACATGGCTACTCTGAAATCAGAGAAACACCAAGACTCTGCAGAATGTTCTCAAGCAACAGACATTGCAACTTTGGAAACAACTGTCGTTTCATCCATTCAACTCCTCATCATCATGATTCTGCTATCATCAACATCACTCCACAACAACAACAAGGGACAGTGCAGAATGCAGGATGCAGGACCATGCAAACTGCTGGTCCTCCTGCTGCAATTAACTTTGGTTCGTCTTCTGCACAAAACAAGATGGTGCAAACTTCTACTGTTCCTGCTACAAATGATCCAGCTAGCAGTAGCACCGTGCCCACAACCAAGTTGCATAAGAATGGACCCTATGCTGGTATATCCAAGTTCGACAAAACGGTCATGCAAAAGGTCATTGGTAAATATGCTGATTGGATTTAA | 498 | 0.4297 | MEAERYSAKFKTQLCIKFMQGTCAHGANCNYAHGYSEIRETPRLCRMFSSNRHCNFGNNCRFIHSTPHHHDSAIINITPQQQQGTVQNAGCRTMQTAGPPAAINFGSSSAQNKMVQTSTVPATNDPASSSTVPTTKLHKNGPYAGISKFDKTVMQKVIGKYADWI* | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g4977 | 165 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 10 | 34 | IPR000571 | GO:0046872 | |
Tpr7g4977 | 165 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 42 | 65 | IPR000571 | GO:0046872 | |
Tpr7g4977 | 165 | Gene3D | - | 4 | 41 | - | - | |
Tpr7g4977 | 165 | Gene3D | - | 42 | 68 | - | - | |
Tpr7g4977 | 165 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 6 | 164 | IPR045877 | GO:0003729 | |
Tpr7g4977 | 165 | SUPERFAMILY | CCCH zinc finger | 8 | 40 | IPR036855 | GO:0046872 | |
Tpr7g4977 | 165 | SMART | c3hfinal6 | 9 | 35 | IPR000571 | GO:0046872 | |
Tpr7g4977 | 165 | SMART | c3hfinal6 | 41 | 66 | IPR000571 | GO:0046872 | |
Tpr7g4977 | 165 | SUPERFAMILY | CCCH zinc finger | 42 | 66 | IPR036855 | GO:0046872 | |
Tpr7g4977 | 165 | ProSiteProfiles | Zinc finger C3H1-type profile. | 9 | 36 | IPR000571 | GO:0046872 | |
Tpr7g4977 | 165 | PANTHER | ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN | 6 | 164 | - | - | |
Tpr7g4977 | 165 | ProSiteProfiles | Zinc finger C3H1-type profile. | 39 | 67 | IPR000571 | GO:0046872 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g4977 | 11 | 80 | C3H Transcription Factor Family | AT1G68200 | 33.333 | 1.63e-08 | 50.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tpr7g4977 | zf-CCCH | 5e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g4977 | - | K18753 | mtr:MTR_2g103290 | 157.918 |