Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4955 ATGGATGCTACTTCTTTGGAGTCAAATAGCAACATCCAAACTGAACAACATCCTTTGCTGATGGAGCAGCCAGAAAGCAGTAATGGACATCACCACATAATTGATGTTACAAGGAATGATGAAACTTTGTCTACATCATCTCATAATGATCAACACTCGGAAACACATTTACCGGTGATTAATAATCAACCAGCTGGGGGTACAGATGACTACACTCATCAAACAGCTTCATCTTCTGCATCTAGATTAGACTCTACATATTCCGCTCCATTGAGAAGTCGTGAGGGGTATGGCCGTCGCAGAACGAATCCATTGAACTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGATTCAAATCATAGCATCTATTGTGGTTTTGTTGTTGTCAAGAAACGAAAATCCACAAGCACCACTGTTTGTGTGGGTTGTAGGTTATGCATCTGGGTGTATTGCCACACTTCCTATTCTTTATTGGCGTTTTCAAAACCGTAATCAAAGAACTGAACAACATACCTCTCAGCCATCTCAAGAAACTTCTGCAAGTAATCATCTAGATAATTCTCATACCGCCGTGTATGTTTCTCATGTTTCGGATGAGGAGAATGGTCATGCTATACAATCAGCTACAGGAAACACTATAATTCCCAGTGTCTTTACTTCTGGTTTTAAGGGATTAGTAGACCATTTGAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAATTGTTTGGATCTTTGGAGGTAACACCTCTTCTTCTGATGCTCCACAATTATACAGGTTATGTATTGTGTTTCTTACTTTTAGCTGTATTGGATATGTTATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCCTGCATAATTTCTGCTTTGGATATTCGGGATGATTTATCTCAAAATAGAGGAGCAACAGTAGAAACAATCAATTCTCTACCAGTCTACAAGTTCAAAGTGAAGAACAATGAAAATGCAGCTTTAGAAGAATGTGGGATTTTGGCTGCAGGGACAGAAAAAGAGCGAATACTCTCAGGAAAAGATGCTGTTTGCTGCATTTGCTTGACAAAATATGCAGATAATGATGAACTTAGAGAGTTACCTTGCTCACACATATTTCATGTTCGATGTGTTGACAAATGGTTAAAGATAAATGCATCTTGTCCTCTTTGTAAAAGTGAAATTGGTGCCAGTAATTAA 1221 0.3882 MDATSLESNSNIQTEQHPLLMEQPESSNGHHHIIDVTRNDETLSTSSHNDQHSETHLPVINNQPAGGTDDYTHQTASSSASRLDSTYSAPLRSREGYGRRRTNPLNSGLWISVELVVTVIQIIASIVVLLLSRNENPQAPLFVWVVGYASGCIATLPILYWRFQNRNQRTEQHTSQPSQETSASNHLDNSHTAVYVSHVSDEENGHAIQSATGNTIIPSVFTSGFKGLVDHLKMALDCFFAVWFVVGIVWIFGGNTSSSDAPQLYRLCIVFLTFSCIGYVMPFILCATICCCLPCIISALDIRDDLSQNRGATVETINSLPVYKFKVKNNENAALEECGILAAGTEKERILSGKDAVCCICLTKYADNDELRELPCSHIFHVRCVDKWLKINASCPLCKSEIGASN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4955 406 Pfam Ring finger domain 358 399 IPR001841 -
Tpr7g4955 406 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 405 - -
Tpr7g4955 406 ProSiteProfiles Zinc finger RING-type profile. 358 399 IPR001841 -
Tpr7g4955 406 SUPERFAMILY RING/U-box 349 403 - -
Tpr7g4955 406 SMART ring_2 358 398 IPR001841 -
Tpr7g4955 406 CDD RING-H2_RNF111_like 357 399 - -
Tpr7g4955 406 MobiDBLite consensus disorder prediction 70 99 - -
Tpr7g4955 406 MobiDBLite consensus disorder prediction 70 88 - -
Tpr7g4955 406 PANTHER PROTEIN, PUTATIVE-RELATED 1 405 - -
Tpr7g4955 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 406 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4955 Tpr-Chr7 57335494 57339550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4955 1 406 C3H Transcription Factor Family AT1G80400 52.392 7.85e-152 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4955 - - gmx:100819516 643.654