Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4948 ATGGAGAAGCAAGTTTTCAAATGTGTAGGGCGTCATTTGGTTGATCCTACCACAAATACATTTTTGAGGATGTTTCTTGTTGTAGCAAGAGCTTCCACCAAGTTGCAGTGCATGTCCTCTTTTCTTGCCGAGTTATCACTCATGAGTCAGAAATTCGTACCTTACCTCCCTTCAAAGGTGGCTGCATCCGCCTTGTTTCTTGCACGGTGGACATTAGACCCTACACGGCATCCTTGGGACGAATCTCTCCAGAAATTCACTACTTACGAGTCATGTGAATTGAAAAATATTGTTTTTTATCTTCAAGCTCTTCAGCAGCAAATTGAGGGCAATGTTTGTACCACAATCCGCAATAAGTATTCAGAACCCAAGTTCCAAAATGTTGCTGCATTATCTTCAAAGGACTTGGATGATACAATGTTCTGA 426 0.4155 MEKQVFKCVGRHLVDPTTNTFLRMFLVVARASTKLQCMSSFLAELSLMSQKFVPYLPSKVAASALFLARWTLDPTRHPWDESLQKFTTYESCELKNIVFYLQALQQQIEGNVCTTIRNKYSEPKFQNVAALSSKDLDDTMF* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4948 141 Gene3D - 4 138 - -
Tpr7g4948 141 Pfam Cyclin, C-terminal domain 16 133 IPR004367 -
Tpr7g4948 141 SMART Cyclin_C_2 16 134 IPR004367 -
Tpr7g4948 141 SUPERFAMILY Cyclin-like 16 132 IPR036915 -
Tpr7g4948 141 PANTHER CYCLINS 1 141 IPR039361 -
Tpr7g4948 141 PANTHER CYCLIN-A2-4 1 141 - -
Tpr7g4948 141 SMART cyclin_7 20 106 IPR013763 -
Tpr7g4948 141 CDD CYCLIN 16 91 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4948 Tpr-Chr7 57250917 57252826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4948 1 141 Core Cell Cycle Gene Families AT5G25380 42.466 3.51e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4948 K06627 - cit:102615664 132.494