Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4896 ATGAAACAAACAAGAAACTGTCACGAAACTTCAAATTCAATAAACTCTTCAAAACCTCAAAAAACAGAGACAAAAAAACAGAGCAAGGTGAAGAAAAACAGAGTCTTTAGCAACCATCCAGTTTATCATGGTGTTCGAATGCGAAGTTGGGGCAAATGGGTATCTGAAATTCGTGAACCTCGCAAGAAATCACGAATTTGGCTTGGAACTTATGCTACTCCCGAAATGGCTGCAAGAGCACATGATGTTGCTGCTTTAAACATAAAGGGTCATTCACCTATTCTTAATTTTCCCGAAATAGCTCACGTGCTTCCTAAACCAATCACGTTGAATCCACGTGATATACAAGTTGCTGCTGCAGAAGCTGCTTCAATGGTGGAATTTGATTCTGAGATGTTACACTCCGACTCAGGTGAGTCATGTTCATCATTTTCATCAGAGTCTTCAGAGCTGAGTGAGATTGTTGAGCTTCCTAATATAGAAGAGAGTTTTGACTCGGTTGAGTTGAGAAGTGAGTTTATTTTGATTGACTCGGTGGAAAATTGGGTGTATCCGTCAGTAGAAAGTTTGTGTGACATGGTGATTGAAGAACAGAGTTTTATGTTATGA 609 0.3941 MKQTRNCHETSNSINSSKPQKTETKKQSKVKKNRVFSNHPVYHGVRMRSWGKWVSEIREPRKKSRIWLGTYATPEMAARAHDVAALNIKGHSPILNFPEIAHVLPKPITLNPRDIQVAAAEAASMVEFDSEMLHSDSGESCSSFSSESSELSEIVELPNIEESFDSVELRSEFILIDSVENWVYPSVESLCDMVIEEQSFML* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4896 202 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Tpr7g4896 202 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Tpr7g4896 202 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Tpr7g4896 202 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Tpr7g4896 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 199 - -
Tpr7g4896 202 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 199 - -
Tpr7g4896 202 MobiDBLite consensus disorder prediction 1 21 - -
Tpr7g4896 202 Pfam AP2 domain 40 91 IPR001471 GO:0003700|GO:0006355
Tpr7g4896 202 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Tpr7g4896 202 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Tpr7g4896 202 MobiDBLite consensus disorder prediction 1 34 - -
Tpr7g4896 202 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4896 Tpr-Chr7 56885270 56886359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4896 25 185 AP2-EREBP Transcription Factor Family AT5G11590 55.114 4.69e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr7g4896 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4896 K09286 - gmx:100784419 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4896 7 56885270 56886359 Tpr7g4896 7 56885270 56886359 ECH