Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4890 ATGTCTTGTAAAGATGGTAAAGGTGGAAATGGAGGAATAGATAATGGAAAATATGTTCGTTATACACCTGAACAAGTTGAAGCTCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTAGTGTTCGTCGTCAACAGCTTATTAGAGAGTGTCCTATTCTTTCTCATATTGAACCTAAGCAGATCAAAGTTTGGTTCCAAAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCTTCACGTTTGCAAGCTGTGAATAGGAAGTTGACTGCTATGAATAAGCTGCTTATGGAGGAGAATGATAGGTTGCAGAAACAAGTTTCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACAACCCAAAATACTAATCTTGCAACCAAAGACACAAGCTGTGATTCAGCGGTGACTAGTGGTCAACGCAGTTTGACGGCCCAGCATCCCCCAAGGGATGCCAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGTGTGGCAGCTAGAGCATGCGGCCTAGTGGGTCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATCGGCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATATTCTGAACGTGCTCCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATATGCGCCAACAACATTGGCTCCTGCGCGGGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGTGAGAGGTCCCTTAAAAATACACAGAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTCCGAGCTGAGATGCTTCCCAGTGGGTACTTGATAAGACCTTGTGAAGGAGGTGGTTCCATAATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTTCCTGAAGTATTGCGTCCACTGTATGAATCATCAACAATGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACTTGAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGTAGACGACCGGCAGCACTTCGAGCACTTGGTCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTAGTGATGAGGGATGGTCAATGATTGGCAATGACGGTGTTGACGATGTTACAATTCTAGTGAATTCATCGCCTGACAAATTAATGGGTCTGAATCTATCATTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCTAAAGCTTCAATGCTATTACAAAATGTGCCTCCAGCCATTCTACTAAGGTTTCTACGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCTATCAAAGTTGGCCCTTGTAGTTTTGCAGGATCTCGGGTTGGAAATTACGGGGGTCAAGTAATTCTTCCTCTAGCCCACACTATTGAGCACGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCAGAAGACACAATAATGCCTAGAGAAGTGTTTCTTTTACAACTGTGCAGTGGAATGGATGAGAATGCTGTTGGTACCTGTGCTGAGCTTATATTTGCTCCAATTGATGCATCTTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATTATTCCTCTTGATTCGGGAAAGGAAGTGGTCAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGATATTGGCCCTGCTGGAAACAAATCTTCAAATGATAGTTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAAGACCATGTAGCATCTATGGCACGGCAATATGTTCGCAGCATTATATCGTCTGTCCAAAGGGTAGCATTGGCACTTTCACCTTCTAATTTGAGTTCACAAGCTGGCCTTAGGACACCACTTGGTACTCCTGAAGCTCAAACGCTTGCTCGTTGGATCTGTAACAGTTATAGGTGCTTCTTGGGTGCTGAGTTACTTAAATCTAATAATGAGGGGAACGAATCTTTACTCAAGTCCTTGTGGCATCACTCCGATGCAATACTATGCTGCACTCTAAAGGCAATGCCCGTGTTCACTTTTGCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTTTACAGGATATAGCATTGGAGAAAATATTTGATGACCATGGCCGAAAGATTCTGTGCTCGGAGTTTCCTCAAATTATACAACAGGGTTTTGCATGTCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGAGACCTATTTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGGTCATTGTATTAGTTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2520 0.4409 MSCKDGKGGNGGIDNGKYVRYTPEQVEALERLYHDCPKPSSVRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTTQNTNLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFSDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSFAGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEVVNPNRTLDLASALDIGPAGNKSSNDSSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSNLSSQAGLRTPLGTPEAQTLARWICNSYRCFLGAELLKSNNEGNESLLKSLWHHSDAILCCTLKAMPVFTFANQAGLDMLETTLVALQDIALEKIFDDHGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENGHCISFMFVNWSFV* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4890 839 CDD START_ArGLABRA2_like 156 371 - -
Tpr7g4890 839 SMART HOX_1 14 80 IPR001356 GO:0003677
Tpr7g4890 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 839 IPR044830 GO:0003700
Tpr7g4890 839 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Tpr7g4890 839 SUPERFAMILY Bet v1-like 161 370 - -
Tpr7g4890 839 ProSiteProfiles START domain profile. 152 353 IPR002913 GO:0008289
Tpr7g4890 839 SMART START_1 161 371 IPR002913 GO:0008289
Tpr7g4890 839 Pfam MEKHLA domain 696 838 IPR013978 -
Tpr7g4890 839 Pfam START domain 162 370 IPR002913 GO:0008289
Tpr7g4890 839 Gene3D - 10 83 - -
Tpr7g4890 839 CDD bZIP 69 108 - -
Tpr7g4890 839 CDD homeodomain 17 77 IPR001356 GO:0003677
Tpr7g4890 839 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Tpr7g4890 839 Gene3D - 196 380 IPR023393 -
Tpr7g4890 839 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 839 - -
Tpr7g4890 839 Coils Coil 72 106 - -
Tpr7g4890 839 Pfam Homeodomain 17 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4890 Tpr-Chr7 56852461 56859830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4890 1 791 Homeobox Transcription Factor Family AT1G52150 84.741 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr7g4890 START 1.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4890 K09338 - gmx:100800165 1550.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4890 7 56852461 56859830 Tpr7g4890 7 56852461 56859830 ECH
Tpr7g4890 7 56852461 56859830 Tpr5g2506 5 46867830 46875446 PCT