Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4877 ATGAATGAAATGACAAGAAATGAAAGAGAATCATCAGAAGAAAGGAAGCTAGAGCTAAGACTTGCTCCACCTGGTGTTGAAAACTGGTTTAACACATCCAACAACAATAAACAAAGAGCTTATGATTATGATTATGATTATGAGTCTAAACTCTCTCTTGGTAATTTTCTTCATTTCCCATCAAACAAAGCTATTGTTGTGAAAGGTAAAGAATCATCATCATCACAAACCTGTTGTCCTAAATCAGTAGAGTTACAGAATGGTGATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTGGGATGGCCACCAATTCGTTCATTCAGGAAGAATCTTGCAACAAGCAGCAATTCTAAGCCATCACCACCTGAGTCACATACTCAACAACACAACAAGGTTGCTGGTAAAAAACCTATTGACAACTTTGGTAAAGGTTTGTTTGTTAAGATTAATATGGATGGTGTTCCAATTGGTAGAAAAGTTGATCTTAATGCTTATGATAGCTATCAAAATCTTTCCTCAGCTGTGGATGAGCTCTTTAGAGGACTCCTTAAAGCTCAAAGAGATTCCTCTAGTTGTGGAGGTAACAAGGAGGAAGAAAAAGTGATTAGTGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCTTTTACACTTGGTACTAAGCAAGACAAGATACCTACTTGA 822 0.3808 MNEMTRNERESSEERKLELRLAPPGVENWFNTSNNNKQRAYDYDYDYESKLSLGNFLHFPSNKAIVVKGKESSSSQTCCPKSVELQNGDNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSNSKPSPPESHTQQHNKVAGKKPIDNFGKGLFVKINMDGVPIGRKVDLNAYDSYQNLSSAVDELFRGLLKAQRDSSSCGGNKEEEKVISGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTKQDKIPT* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4877 273 SUPERFAMILY CAD & PB1 domains 150 253 - -
Tpr7g4877 273 MobiDBLite consensus disorder prediction 121 144 - -
Tpr7g4877 273 Pfam AUX/IAA family 17 260 IPR033389 -
Tpr7g4877 273 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 270 IPR003311 GO:0005634|GO:0006355
Tpr7g4877 273 MobiDBLite consensus disorder prediction 121 143 - -
Tpr7g4877 273 Gene3D - 150 268 - -
Tpr7g4877 273 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 270 - -
Tpr7g4877 273 ProSiteProfiles PB1 domain profile. 154 256 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4877 Tpr-Chr7 56690340 56694581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4877 158 267 B3 DNA Binding Superfamily AT4G23980 34.545 1.99e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr7g4877 AUX_IAA 9.4e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4877 K14484 - gmx:100804593 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2485 5 46548259 46552813 Tpr7g4877 7 56690340 56694581 ECH
Tpr7g4877 7 56690340 56694581 Tpr7g4877 7 56690340 56694581 ECH
Tpr7g4877 7 56690340 56694581 Tpr5g2485 5 46548259 46552813 PCT