Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4863 ATGGATAGTCTTAGTTGGAATGATGACTCACAACTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGACCTTGAAAGAGACTACTCAATGTCCAATCCAAGTTCAAGTGTTTTTAATTATCAAATGCAAGATATGCAGAAGATTCAATCAGAAGCTGAAACCAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATCAACACACCTAACAATTATGTGCCAGATTTCAACATGTCCCATCAACAAAACAGCAAGAGTACTACTACTGCTACATGCTCTCTTGAATCATCACTTGATTGTTTGCTTTCAGCAACTACTAATAGTAACACTGACACTAATTCTATTCAAGATGATGGAATTTCCATGATTTTTTCTGATTGCAAAAACAGAAACTCATGGAACTTCAATGCAGTTTCTTCTGTTGAATATGAGAGTACTAATGCTAGAAACAAAGACATGCAGTATCCATTCAAGGAAATAGAGGAAACATTATCTCAAATTTCCTCAGATCAAGGTAAAATCATTGATTCTAATTCCAAGGTTCATTCCACAAAAAGGACTAAGATTGATCAATATGATCCTTATAATTATAACTTCAATATTACTCAGAATTCTTCTGCCACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCAAGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAATGTCATTGTCAAATTCATCCATTCATGAAGAACCTGATCCAGAAGCTATAGCTCAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGATGAATTTAGGTTTGGAAGTGGTGGAAAAGCCGAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAAAGAATAAGCGAAAGGATTAGAGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGGTCACAAGTTAAAGCATTAGAGAATCTAGGAAACAAGATTGATACAATGAAGAATTGTCCTTCTACAAACCTAGCCTTCTCTTTCAACCCTTCAAATTCCATGCAAAGTACTCATTTTCCCATCCAAAACCCTAGTGAAAATATCCAATATTCTCAGGGTTGA 1227 0.3586 MDSLSWNDDSQLVANIPILWNTQPQDLERDYSMSNPSSSVFNYQMQDMQKIQSEAETSWEETLIFQSYPSLSVNINTPNNYVPDFNMSHQQNSKSTTTATCSLESSLDCLLSATTNSNTDTNSIQDDGISMIFSDCKNRNSWNFNAVSSVEYESTNARNKDMQYPFKEIEETLSQISSDQGKIIDSNSKVHSTKRTKIDQYDPYNYNFNITQNSSATEFGFKLISEKPPKSKKPRWDNKCQGSSNINFQQPNSSMSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVVEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMKNCPSTNLAFSFNPSNSMQSTHFPIQNPSENIQYSQG* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4863 408 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 405 IPR045843 GO:0003700|GO:0006355
Tpr7g4863 408 SMART finulus 311 360 IPR011598 GO:0046983
Tpr7g4863 408 Pfam Helix-loop-helix DNA-binding domain 315 354 IPR011598 GO:0046983
Tpr7g4863 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Tpr7g4863 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 364 IPR036638 GO:0046983
Tpr7g4863 408 Coils Coil 344 364 - -
Tpr7g4863 408 PANTHER TRANSCRIPTION FACTOR BHLH87 1 405 - -
Tpr7g4863 408 Gene3D - 310 374 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4863 Tpr-Chr7 56570574 56573200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4863 31 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.215 7.48e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g4863 HLH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4863 - - gmx:100778004 436.032