Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4859 ATGGCAACAGTACCTGGTCCACTTGTTTGGGAGATCGTGAAGAGGAACAACTCATTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAATTCAGCAGAGAGCCAAACAATCTCTACAACCTCAACTCCTTCAAATACTCTGGTTTGGCCAACAAGAAAACAGTAACTGTTCAGGCTGCTGGTAAAGATCAATCTGTGTTGTTGGCAACCACCAAGCCAAGGAAGCAGAACAAGCCTGCAGCTTTGCTTCACAGATCTGTGATGAAGAAGGAGTTCAGGAGAATGGCAAAGGCTGTGCAAAATCAGGTGGCAGATAACTACTACAGACCTGATCTCAAGAAGGCTGCTCTTGCAAGGTTGAGCGTCGTCAACAGGAGCCTCAAAGTTGCAAAGTCTGGTGCAAAGAAGAGAAACAGACATGCTTAA 432 0.4468 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSFKYSGLANKKTVTVQAAGKDQSVLLATTKPRKQNKPAALLHRSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4859 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Tpr7g4859 143 Gene3D - 7 133 - -
Tpr7g4859 143 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 143 - -
Tpr7g4859 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 143 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4859 Tpr-Chr7 56546412 56549161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4859 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 69.231 3.10e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4859 K02903 - gmx:100500189 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2443 5 46071337 46073245 Tpr7g4859 7 56546412 56549161 ECH
Tpr7g4859 7 56546412 56549161 Tpr7g4859 7 56546412 56549161 ECH
Tpr7g4859 7 56546412 56549161 Tpr5g2443 5 46071337 46073245 PCT