Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4850 ATGGGATCCGAAGCAGACCCTCTTGAAAACCTACCAAAAAGACAAAAATGCCCGGCATGCTATAGGCAATATAAGAAGAAAGAACATCTTATTGAGCACATGAAAACCTCTTACCACTCTGTCCATCAACCTAGATGTATGGTCTGTAAGAAGCACTGCAAATCTTTTGAATCTTTGAGGGAGCATCTCATCGGACCTTTGGCTAAAGGAGTTTGTTCAGCTATTTTCTCTAAATGGGGTTGTCAACTTTGTCTGACACTATTTGATAGTCCCGCTTCTCTTGATGACCATAGCGAAACTTGTCGCCTATCTGCCCCTGTTCCTATGGGCACAAGTGAAGTTCCCTATATAGACTCCCATATTGATTTTCTGGATTCTTCTGATGAAAATAATGGTGACTGGCGCCCTAGAGCAATTGCAATGGACTGTGAAATGGTTGGTGGGGGAAGTGATGGATCACTGGAACTTTGTGGTAGAATATGCTTGGTTGATGAAGATGAGAACTTAATCTTTCACACATATGTAAAACCTCAAATCCCTGTTACTAACTATAGGTATGATATAACTGGGCTGACTGAAGAGCATCTTCGAGATGGTATGCCACTTAAGGAAGTTCGGGAAAAAGTATTGCAAATTCTATACAATGGAGAATCCATTGGTAAAGCTAGACTGGATGGTGGCAAGGCCAGACTTGTTGTAGGGCATGATTTGGCCCATGATTTTGATTGCTTGGGAATGGATTATCCCTATCACCTGATCAGAGACACTGCAAAGTACCGTCCGTTGGCGAAGACAAACTTCGCCAGTCATTCGCTTAAGTATCTTACCAGAACATATCTTGGTTATGAGATCCAAACTGGCATTCATGACCCGTACGAAGATTGTGTTTCTGTGATGAGACTGTACAAGAGAATGCGAGATCAGATTCATGAGCATGAAGGCTATGGAAAGTTGGCTCCGAGTGACAGCATTGTTGGCATTTGCGACAGTTGGAGATCCAAGGAGCTTGACAACCTCACACCAGATGAGCTTTATGCCATCTCACAACCGGACTATAAGTGCTGGTGTTTGGATTTGAAGCCAAAATCTGTGGAAGCTTGA 1101 0.4296 MGSEADPLENLPKRQKCPACYRQYKKKEHLIEHMKTSYHSVHQPRCMVCKKHCKSFESLREHLIGPLAKGVCSAIFSKWGCQLCLTLFDSPASLDDHSETCRLSAPVPMGTSEVPYIDSHIDFLDSSDENNGDWRPRAIAMDCEMVGGGSDGSLELCGRICLVDEDENLIFHTYVKPQIPVTNYRYDITGLTEEHLRDGMPLKEVREKVLQILYNGESIGKARLDGGKARLVVGHDLAHDFDCLGMDYPYHLIRDTAKYRPLAKTNFASHSLKYLTRTYLGYEIQTGIHDPYEDCVSVMRLYKRMRDQIHEHEGYGKLAPSDSIVGICDSWRSKELDNLTPDELYAISQPDYKCWCLDLKPKSVEA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4850 366 SMART exoiiiendus 137 311 IPR013520 -
Tpr7g4850 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 13 362 - -
Tpr7g4850 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Tpr7g4850 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Tpr7g4850 366 SUPERFAMILY Ribonuclease H-like 138 309 IPR012337 -
Tpr7g4850 366 PANTHER EXONUCLEASE FAMILY PROTEIN 13 362 - -
Tpr7g4850 366 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Tpr7g4850 366 Pfam Exonuclease 139 302 IPR013520 -
Tpr7g4850 366 Gene3D - 135 316 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4850 Tpr-Chr7 56464904 56470656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4850 14 358 C2H2 Transcription Factor Family AT3G27970 53.582 9.62e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4850 K18327 - gmx:100805841 580.482