Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4848 ATGGACAAAAAGCTTGAGCTTATCCATGGAACAATTGAAGCTACCATCTTTAATGCAACTCCTTACTCCCCTTCATTTCCCTTCAATTGTTTATTTATAAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAACAAGAAAGTGGCAAAAACAACACAAGAGAGTGAACGTGTTTGGAACCAAACATTTCAGATTCATTGTGCTCATCTAGCTGATTCTGTTATCACCATTACACTGAAAACATCATGTTCCATATTAGGAAAATTCCACATCCAAGCAAAACAGTTGAAGGAAGAGAGTTTGGTCAATGGATTCTTCCCTCTCCTTATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAACCAGCAAATTTGGAACCAAGTTGGACAAAGTTACTAAGTAGTGAGGAGTTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCATCATTCACCTACTTTTCAACCTCCTTTTGATGTATGTGGAGTTCCAACAAAGCTATGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAATATTTAGTATATATTGCAGGCTGGTCCTTCAATCCTAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAATAAAGTTGGGTGAGTTATTGAAGAAGAAAGCAGAAGAAGGAGTTGCTGTGAGGATTATGATTTGGGATGATGAAACATCATTGCCATTTATCAAGAACAAAGGTGTGATGAACACACATGATGAAGATGCATTTGCTTACTTTAAACACACAAAAGTAGTATGCAGAAAGTGTCCTAGACTACATAACAAATTCCCAACAATCTTTGCTCATCATCAGAAAACCATAACTGTGGATACAAAAGCTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGCGGTTTGGATTTATGCGACGGTCGATATGATACCGAGAAACATTCATTGTTTCAAACACTTACCATGGAATCACATTACCATGATTTCTACCAGACAAACATTTCAGGAGCTAGCCTCAACAAAGGTGGTCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACCGGCGAGGCTGCTTGGGATGTATTAACCAACTTTGAACAAAGATGGACAAAACAATGTGATTCGTCTCTTCTAGTCCCTGCAAACACTTTAGAAAATCTCATTCCTATTTCCTCAACAAGCACTTCCTTGGAAAGGAATTGGAATGTACAAGTATATCGGTCGATCGACCATGTCTCAGCTAGCCAACTCTTCAGAAAACTAACAGTTGAGAGTAGCATTCATGAAGCATATGTTGAAGCAATTAGGCGTGCCGATAAGTTTGTGTACATTGAAAACCAATATTTCATTGGTGGGTGCCATTTGTGGCAACAAGATAAAAACAGTGGCTGCAGAAATTTGATTCCTATTGAGATTGCACTCAAGGTTGTCAACAAGATTAAAGCCAGAGAAAGATTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCGGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATTATAGAAAGTGGCGAGTCAGGACATCCAAGAGATTACTTGAATTTCTTTTGCCTTGCAAATAGGGAAAATAAGGAAAATGAGGAGTATCTTCCTCCACATTCTCCTCATCCTGAAACTCAATATTGGAATGCACAGAAAAATAGAAGATTTATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATATATATTAATAGGATCAGCGAATGTGAACCAAAGATCGATGGATGGGCAAAGGGACACGGAGATTGCGATCGGAGGTTACCAATCTCAAGATGGAGCTAATCACTGCATAAGCAAAGGTGATATTCATGCATACAGAATGTCAATGTGGTATGAACACACTGGTAGTTCTGAGAAGTTGTTTTTAGAACCAGAAAGTTTAGAATGTGTGCAGAGAATGTGCTCAATAGGAGATAAAATGTGGAAAATTTACAGTAGTGAAGAAATTGTTGACATGGAAGGTGTGCACCTAGTAACTTACCCTATGATAGTAACACAAGATGGATCTGTGGAAGACTTAACTAATGGTGAGGATCATTTTCCAGATACAAAATCTCTAGTCAAAGGGACAAGATCAAAATTATTACCCTCTATCATGACCACTTAG 2277 0.3838 MDKKLELIHGTIEATIFNATPYSPSFPFNCLFINGKPAYVTIKIDNKKVAKTTQESERVWNQTFQIHCAHLADSVITITLKTSCSILGKFHIQAKQLKEESLVNGFFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEFQGLRDATFPQRSNCHVKLYHDAHHSPTFQPPFDVCGVPTKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRIMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVVCRKCPRLHNKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFQTLTMESHYHDFYQTNISGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDSSLLVPANTLENLIPISSTSTSLERNWNVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADKFVYIENQYFIGGCHLWQQDKNSGCRNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGESGHPRDYLNFFCLANRENKENEEYLPPHSPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGANHCISKGDIHAYRMSMWYEHTGSSEKLFLEPESLECVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPMIVTQDGSVEDLTNGEDHFPDTKSLVKGTRSKLLPSIMTT* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4848 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Tpr7g4848 758 Gene3D Endonuclease Chain A 181 424 - -
Tpr7g4848 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Tpr7g4848 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 124 IPR035892 -
Tpr7g4848 758 SMART pld_4 295 332 IPR001736 GO:0003824
Tpr7g4848 758 SMART pld_4 603 630 IPR001736 GO:0003824
Tpr7g4848 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Tpr7g4848 758 SUPERFAMILY Phospholipase D/nuclease 421 687 - -
Tpr7g4848 758 PANTHER PHOSPHOLIPASE D 4 758 IPR015679 -
Tpr7g4848 758 PIRSF PLD_plant 3 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tpr7g4848 758 Pfam Phospholipase D Active site motif 606 630 IPR001736 GO:0003824
Tpr7g4848 758 Pfam Phospholipase D Active site motif 296 332 IPR001736 GO:0003824
Tpr7g4848 758 Gene3D Endonuclease Chain A 444 653 - -
Tpr7g4848 758 PANTHER PHOSPHOLIPASE D ALPHA 4 758 - -
Tpr7g4848 758 Pfam C2 domain 38 109 IPR000008 -
Tpr7g4848 758 SUPERFAMILY Phospholipase D/nuclease 143 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4848 Tpr-Chr7 56442976 56446987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4848 30 758 Phospholipase D Gene Family (Wang group) AT1G55180 62.180 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4848 K01115 - gmx:100807431 1357.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4848 7 56442976 56446987 Tpr7g4848 7 56442976 56446987 ECH
Tpr7g4848 7 56442976 56446987 Tpr5g2396 5 45616831 45621343 PCT