Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4846 ATGAGCCGCTACGATAGCCGTTCCTCCGACCCCACTTCTTACCGCGACCGGAGAAGTGATTCCGGTCTAGGTGGAGGAGCATCTGCACCTGTTTCTACTACCGCCGCAACTTCCGGTGGTTCTCCGAGGAAAGTTAATTTGGATGGATTACCTCATTTTGAGAAAAATTTCTACAATGAATCCCCTTCTGTTCGGGCAATGACTGAGGATGAAGTTAATGACTATCGTCTTCGTCGTGAAATCACTGTTGAAGGCAAAGATGTACCTAAACCTATTAAATCATTCTCCGATGCTTCTTTTCCAGACTATGTGTTGGAAGAAGTTAAAAAAGCTGGATTTGTTGAACCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAAGGACGTGATCTGATAGGAATTGCAGAGACAGGATCAGGGAAGACTCTGGCTTATTTGTTACCTGCCATAGTGCATGTTAATGCCCAGCCCATTCTAGATCCTGGGGATGGGCCTATTGTCTTAGTTTTGGCCCCGACACGTGAACTTGCCGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCAAGGATTAAGAGCACATGCATATATGGCGGGGTTCCTAAGGGCCCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTCATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACTAACTTGCGAAGGGTCACATACCTGGTATTGGATGAAGCTGATAGAATGTTGGACATGGGTTTTGATCCTCAGATTCGGAAAATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCTACTTGGCCAAAGGAGGTCGAACAATTGGCAAGGCAGTTCCTTTATAATCCATACAAAGTAATTATAGGTTCTGAAGATTTAAAGGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAAGACATCATGGATGGAAGCCGAATATTGATATTCATGGATACTAAAAAAGGATGTGATCAGATTACTAGACAGCTCCGCATGGATGGTTGGCCTGCCCTCTCAATTCATGGAGACAAAAGTCAAGCAGAGAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACCGCAACGGATGTTGCAGCTCGTGGTTTAGATGTGAAAGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGAACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCAGCTAATGCCAGATTTGCAAAGGAACTTATTAGCATACTCGAGGAAGCTGGACAGAGGGTGAGTCCTGATTTGGCAGCAATGGGGCGTGGTGCACCTCCTCCGCCTTCAGGAGGCTTCCGAGACCGGGGGAAGAGTTTTGGCAGTGGTCGCCCATGGAGCTGA 1494 0.4505 MSRYDSRSSDPTSYRDRRSDSGLGGGASAPVSTTAATSGGSPRKVNLDGLPHFEKNFYNESPSVRAMTEDEVNDYRLRREITVEGKDVPKPIKSFSDASFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSPDLAAMGRGAPPPPSGGFRDRGKSFGSGRPWS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4846 497 SMART helicmild6 352 433 IPR001650 -
Tpr7g4846 497 MobiDBLite consensus disorder prediction 26 41 - -
Tpr7g4846 497 Pfam Helicase conserved C-terminal domain 324 433 IPR001650 -
Tpr7g4846 497 PANTHER LD32873P 48 483 - -
Tpr7g4846 497 Gene3D - 305 469 IPR027417 -
Tpr7g4846 497 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 483 - -
Tpr7g4846 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Tpr7g4846 497 CDD DEADc_DDX5_DDX17 104 299 - -
Tpr7g4846 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 449 IPR027417 -
Tpr7g4846 497 MobiDBLite consensus disorder prediction 1 45 - -
Tpr7g4846 497 MobiDBLite consensus disorder prediction 467 497 - -
Tpr7g4846 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 472 IPR001650 -
Tpr7g4846 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 299 IPR014001 -
Tpr7g4846 497 MobiDBLite consensus disorder prediction 1 17 - -
Tpr7g4846 497 Pfam DEAD/DEAH box helicase 117 288 IPR011545 GO:0003676|GO:0005524
Tpr7g4846 497 CDD SF2_C_DEAD 312 442 - -
Tpr7g4846 497 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 245 253 IPR000629 -
Tpr7g4846 497 Gene3D - 56 303 IPR027417 -
Tpr7g4846 497 SMART ultradead3 112 315 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4846 Tpr-Chr7 56426568 56432517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4846 80 453 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 1.05e-77 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4846 K12823 - gmx:100790464 873.233