Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g4846 | ATGAGCCGCTACGATAGCCGTTCCTCCGACCCCACTTCTTACCGCGACCGGAGAAGTGATTCCGGTCTAGGTGGAGGAGCATCTGCACCTGTTTCTACTACCGCCGCAACTTCCGGTGGTTCTCCGAGGAAAGTTAATTTGGATGGATTACCTCATTTTGAGAAAAATTTCTACAATGAATCCCCTTCTGTTCGGGCAATGACTGAGGATGAAGTTAATGACTATCGTCTTCGTCGTGAAATCACTGTTGAAGGCAAAGATGTACCTAAACCTATTAAATCATTCTCCGATGCTTCTTTTCCAGACTATGTGTTGGAAGAAGTTAAAAAAGCTGGATTTGTTGAACCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAAGGACGTGATCTGATAGGAATTGCAGAGACAGGATCAGGGAAGACTCTGGCTTATTTGTTACCTGCCATAGTGCATGTTAATGCCCAGCCCATTCTAGATCCTGGGGATGGGCCTATTGTCTTAGTTTTGGCCCCGACACGTGAACTTGCCGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCAAGGATTAAGAGCACATGCATATATGGCGGGGTTCCTAAGGGCCCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTCATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACTAACTTGCGAAGGGTCACATACCTGGTATTGGATGAAGCTGATAGAATGTTGGACATGGGTTTTGATCCTCAGATTCGGAAAATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCTACTTGGCCAAAGGAGGTCGAACAATTGGCAAGGCAGTTCCTTTATAATCCATACAAAGTAATTATAGGTTCTGAAGATTTAAAGGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAAGACATCATGGATGGAAGCCGAATATTGATATTCATGGATACTAAAAAAGGATGTGATCAGATTACTAGACAGCTCCGCATGGATGGTTGGCCTGCCCTCTCAATTCATGGAGACAAAAGTCAAGCAGAGAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACCGCAACGGATGTTGCAGCTCGTGGTTTAGATGTGAAAGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGAACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCAGCTAATGCCAGATTTGCAAAGGAACTTATTAGCATACTCGAGGAAGCTGGACAGAGGGTGAGTCCTGATTTGGCAGCAATGGGGCGTGGTGCACCTCCTCCGCCTTCAGGAGGCTTCCGAGACCGGGGGAAGAGTTTTGGCAGTGGTCGCCCATGGAGCTGA | 1494 | 0.4505 | MSRYDSRSSDPTSYRDRRSDSGLGGGASAPVSTTAATSGGSPRKVNLDGLPHFEKNFYNESPSVRAMTEDEVNDYRLRREITVEGKDVPKPIKSFSDASFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSPDLAAMGRGAPPPPSGGFRDRGKSFGSGRPWS* | 498 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g4846 | 497 | SMART | helicmild6 | 352 | 433 | IPR001650 | - | |
Tpr7g4846 | 497 | MobiDBLite | consensus disorder prediction | 26 | 41 | - | - | |
Tpr7g4846 | 497 | Pfam | Helicase conserved C-terminal domain | 324 | 433 | IPR001650 | - | |
Tpr7g4846 | 497 | PANTHER | LD32873P | 48 | 483 | - | - | |
Tpr7g4846 | 497 | Gene3D | - | 305 | 469 | IPR027417 | - | |
Tpr7g4846 | 497 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 48 | 483 | - | - | |
Tpr7g4846 | 497 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 93 | 121 | IPR014014 | GO:0003724 | |
Tpr7g4846 | 497 | CDD | DEADc_DDX5_DDX17 | 104 | 299 | - | - | |
Tpr7g4846 | 497 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 449 | IPR027417 | - | |
Tpr7g4846 | 497 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Tpr7g4846 | 497 | MobiDBLite | consensus disorder prediction | 467 | 497 | - | - | |
Tpr7g4846 | 497 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 327 | 472 | IPR001650 | - | |
Tpr7g4846 | 497 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 124 | 299 | IPR014001 | - | |
Tpr7g4846 | 497 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Tpr7g4846 | 497 | Pfam | DEAD/DEAH box helicase | 117 | 288 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr7g4846 | 497 | CDD | SF2_C_DEAD | 312 | 442 | - | - | |
Tpr7g4846 | 497 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 245 | 253 | IPR000629 | - | |
Tpr7g4846 | 497 | Gene3D | - | 56 | 303 | IPR027417 | - | |
Tpr7g4846 | 497 | SMART | ultradead3 | 112 | 315 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g4846 | Tpr-Chr7 | 56426568 | 56432517 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g4846 | 80 | 453 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.933 | 1.05e-77 | 247 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g4846 | K12823 | - | gmx:100790464 | 873.233 |