Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4836 ATGAACAATAATAATAACAACAACAACAACATCGTCTCGAGGAACGGAAACGGAACAACTCAAGCTTGTGCCGCTTGTAAATACCAACGTCGGAAGTGTGGTCCAACTTGTATTCTTGCACCTTATTTTCCTCACGATCGTCAAAAACAATTTTTAAACGCTCATAAATTATTTGGTGTTGGTAAAATCACAAACATGATTAAGAATGTTCCGCCTGAACTTCGAGATGTAACTATGGGAACAATCATGTATCAATCTGATATGCGGGCCATTGATCCGGTTGGTGGTTGTTATAGAGCTCTTCAACAGCTTCAATCTCAATGTGAATTTTTCCAAGCTGAGCTTGATTTAACTCGTCAACATATTGCCATTTGTCGAGCATCGTCACAATCACAACAACTTGCTGCTAATTCTAATCATCATCATCATCATTATAATGATATGATCATGAATAATAATGGTAATGATGTTAATGATGCTGCTGCTGCTATGAATATTTTAAATCAGTTTAATCAGCAGCATTTTGTTGAAGAACAAATGAATATTAATATGCTGCCTCAACCGCAACAACTGCAACCGCAATATGTTGATGATGTCGATCTTAACCCTAATTATGTTCCTTTACAACAAGAGGATCTTAATACATGGGTGAATTCTATACCGTTGTCGCCGTTAACGTTGAATGACAACAAAAAGGAGATGGAAGAGGAGGAAGGAGAAAATGAAGAGATTGTTGGTGATGATAAAGAAAGTGATCAGAAACCTGTTTTTGATCTAATCAATGAAATGAATTCTTTGGATACCGGAAGTAATAATATTGATCCAGGGCACCAGTGA 837 0.3668 MNNNNNNNNNIVSRNGNGTTQACAACKYQRRKCGPTCILAPYFPHDRQKQFLNAHKLFGVGKITNMIKNVPPELRDVTMGTIMYQSDMRAIDPVGGCYRALQQLQSQCEFFQAELDLTRQHIAICRASSQSQQLAANSNHHHHHYNDMIMNNNGNDVNDAAAAMNILNQFNQQHFVEEQMNINMLPQPQQLQPQYVDDVDLNPNYVPLQQEDLNTWVNSIPLSPLTLNDNKKEMEEEEGENEEIVGDDKESDQKPVFDLINEMNSLDTGSNNIDPGHQ* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4836 278 MobiDBLite consensus disorder prediction 263 278 - -
Tpr7g4836 278 ProSiteProfiles LOB domain profile. 21 122 IPR004883 -
Tpr7g4836 278 Pfam Lateral organ boundaries (LOB) domain 22 119 IPR004883 -
Tpr7g4836 278 PANTHER LOB DOMAIN PROTEIN 18 269 - -
Tpr7g4836 278 Coils Coil 227 247 - -
Tpr7g4836 278 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 269 - -
Tpr7g4836 278 Coils Coil 101 121 - -
Tpr7g4836 278 MobiDBLite consensus disorder prediction 227 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4836 Tpr-Chr7 56338771 56340638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4836 21 166 AS2 family AT3G13850 48.630 4.01e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr7g4836 LOB 8.7e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4836 7 56338771 56340638 Tpr5g2364 5 45171555 45172620 PCT