Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4834 ATGATCAAAGGTTTTATGTTTCAACAACCATTAGAAGAAGAAAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGAAACAGAAATGAAATTGGTACTAATTATCATCATCAACAATACTTAGCTCCATCGCAATCTACTCAAACTCATGATGAACCTCCTCCACCTAAGAAAAGGAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAAAGAGCAAGTAATGAGATAATAAGGAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCTTAGGGGACCTAACTGGTATCAAGAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAAACCTGTGGCACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATCCCTCCTCCTTCTCCAATTCCTCAACCAAATTCTCACAACATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAGCATCAAAATTTCAGCTTTTTAAGACAAGAACAAGAAATTCAAATACCCTCTTGGCTTTATCAATCTAGCAACATTGATATTTCTTCTTCAAACTATTCAAGATTGGATCAAAATCAAATTCAAAGTCTTGATGAAAACCCTAACCCTAGAAATGGTCCCACATTTCCATCCTACCACCAACCATCTGAAATTTCACCTCAGATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAATCCATGATCATGATAAGTGGGACCCACAAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATCATAAACAATTTTTCTTCTTCTGGGTTTGATGGAACTTCTTTTGAGAATACTTATGCTAAGAATATTCTTAATTCAAATCATCATGATCATCGTAATGATGGCGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTTAGACCACTTTCTGATAGTGAAATTCTCAACATTGCTGGTATGGGAAATTGCATGAACTCTTCGAATTCCCATCGTGAACAAAACCAATCCCTAAAACCATGGCAAGGTAATTAG 1386 0.3831 MIKGFMFQQPLEEENMSNLTSASGEASANSSGNRNEIGTNYHHQQYLAPSQSTQTHDEPPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIIPPPSPIPQPNSHNMINLQTQDFSLKKEHQNFSFLRQEQEIQIPSWLYQSSNIDISSSNYSRLDQNQIQSLDENPNPRNGPTFPSYHQPSEISPQMSATALLQKAAQMGSTSSSQQQSMIMISGTHKHCHVSVDDNNLSSCEDQIINNFSSSGFDGTSFENTYAKNILNSNHHDHRNDGGVGAGGNDGFTRDFLGLRPLSDSEILNIAGMGNCMNSSNSHREQNQSLKPWQGN* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4834 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 375 - -
Tpr7g4834 461 MobiDBLite consensus disorder prediction 1 73 - -
Tpr7g4834 461 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 375 - -
Tpr7g4834 461 Gene3D Classic Zinc Finger 147 227 - -
Tpr7g4834 461 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Tpr7g4834 461 SUPERFAMILY beta-beta-alpha zinc fingers 91 189 IPR036236 -
Tpr7g4834 461 SMART c2h2final6 169 189 IPR013087 -
Tpr7g4834 461 SMART c2h2final6 92 114 IPR013087 -
Tpr7g4834 461 SMART c2h2final6 134 164 IPR013087 -
Tpr7g4834 461 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Tpr7g4834 461 Gene3D Classic Zinc Finger 71 138 - -
Tpr7g4834 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Tpr7g4834 461 MobiDBLite consensus disorder prediction 11 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4834 Tpr-Chr7 56318370 56321724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4834 13 445 IDZ Gene Family AT1G55110 54.684 4.36e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g4834 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4834 K25870 - lja:Lj3g3v0323160.3 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4834 7 56318370 56321724 Tpr5g2360 5 45140456 45143704 PCT