Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4819 ATGGGGCATCACTCTTGCTGCAACAAACAGAAGGTGAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAAATTATGGACATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGGCTACAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATTAACTATCTAAGACCAGATTTGAAACGTGGAAGTTTTTCACCACAAGAAGCTGCTCTCATTATTGAACTTCATACTATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCATTTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAATTCAAGCATAAAAAAGAAACTACTTTCACATGATCTTGTTCCTTCTTTAACCACATTTTCTGATCATATTCATTGTCCTACAAATGTTCCTATGGAAAGTTTCTTCCCTTTATTTAATGACAATCCTACCCTTAACAACTTAGATCATCACTTATACCTTCCTATCAATATCCCATCTCCAATCCTACAAGATCAAGTTGATATCAAGAATATTATTGATATTAACAATTTCAATGCAAATTTCTTACATGTTCATCAAAATAATCCAATATTACCAGAAATTACAATACCATTATCCAATAATATTGTTCCACCTTCTTATGATCAATTAGATACATGGTCATTATTTCATCATCTCAATCCAAATATTCAAGAAAATCATCAAATTATTGCCACAAAAAGTGAAGCTTCCACACAAAATTTCAATATTGTTGATGATAATTTTATCAATCCAATTCCAAATACTTGGCATCATTTGATGGAACTTGAGCCTATTGTGCCAAAAGTGTGTGAAACTATAAAGAATGATTATGTTTGTAGCATTCCATTTTCTTTTTCTGATTCTTCACAAGAACATGATCATCATCAAGTTGTCAATCAAAATGATGAGTGTTATACAGATCAACAACAGAGTATAATTTGTCCACAAGATCATCATCAAATTGTGGCAGCATCAAATAATGATCAAGTGGAGTATATTGATTCTCTCATCATGTCATCATTGCCATCTTCAACAACAACATCTTCATCATCACCATTATCATTCTATCAACCACAAGACAAAATTCTCACAAAACCAATCCTTCCTTCAAGTAATTGA 1146 0.3351 MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDLVPSLTTFSDHIHCPTNVPMESFFPLFNDNPTLNNLDHHLYLPINIPSPILQDQVDIKNIIDINNFNANFLHVHQNNPILPEITIPLSNNIVPPSYDQLDTWSLFHHLNPNIQENHQIIATKSEASTQNFNIVDDNFINPIPNTWHHLMELEPIVPKVCETIKNDYVCSIPFSFSDSSQEHDHHQVVNQNDECYTDQQQSIICPQDHHQIVAASNNDQVEYIDSLIMSSLPSSTTTSSSSPLSFYQPQDKILTKPILPSSN* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4819 381 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr7g4819 381 PANTHER MYB DOMAIN PROTEIN 55 2 366 - -
Tpr7g4819 381 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr7g4819 381 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr7g4819 381 CDD SANT 17 61 IPR001005 -
Tpr7g4819 381 SMART sant 13 63 IPR001005 -
Tpr7g4819 381 SMART sant 66 114 IPR001005 -
Tpr7g4819 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr7g4819 381 Gene3D - 69 116 - -
Tpr7g4819 381 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Tpr7g4819 381 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr7g4819 381 CDD SANT 69 109 IPR001005 -
Tpr7g4819 381 Gene3D - 11 67 - -
Tpr7g4819 381 PANTHER TRANSCRIPTION FACTOR MYB26 2 366 - -
Tpr7g4819 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4819 Tpr-Chr7 56213054 56214885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4819 1 118 MYB Transcription Factor Family AT3G13890 95.763 1.46e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr7g4819 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4819 K09422 - gmx:102662609 417.157