Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4812 ATGGGAAATCAAAAGCAAAAGTGGACGGCGGAAGAAGAAGAAGCGTTACAAGTCGGCGTTCAAAGATACGGTGCCGGAAAATGGAAAAACATTCTCCGTGACCCTGAACTTCAACCTAAACTCATTAGTCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTGAATGTTTTCCCTGGTCAAACTGCTAATGCTAAAGCTAGGGCAACTCCTAAGGCTAAACCATCACCATCAGTTGTTCCTGTTAATGCTACTCTTTCTCCTTCTCCGGTTACTGTTATTACTGCTGCTGCTACTCCTTCTCCGGCTACTACTCCTGCTCCTGTTAATGCTACTACTGTGCATAATGTTTCTCCTGTACCTCAAACTACTCAATTTCAGACTCAGACTCCAACTCGCCGCCCTCCGCAAAATGATGATGATGCTAAAATTCCTCCAAAGTACAATTCAATGATATTTGAAGCTTTATCAACACTCAAAGATACCAATGGTTCTGACTTAAGTGCTATTGTTAGCTTTATTGAGCAAAAGCACAACCTTCCTCAAAATCCAAATTTCAGAAAGACATTAGGTTCAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTCGATAAGGTACAAAATGGTTACAAGTTAAAGGATACCGCAATAGAGACAAAGCCAGCTGATGACACAAAACCACCTGCACCAAAAGAAGAAATGGATCCACCAGTGTCAATTAATACTTCGGCATATGATGATGCAATGAGAGAAGCTGCCGAAACTGTAGCCATCAGAATTGCTGAAGCAGAGCATAGGTCATTTTTGGCTGCTGCTGCAGTCAAGGAGGCAGAAAGATATGCAAAGTTTGATGAGGAAAATGATGCAATGTTAAAGTTTGCAGAAGAGCTTTTAGAAAAATGCAAGCTCGGTGGAAATGTTCGCTTTGCTTAA 936 0.4135 MGNQKQKWTAEEEEALQVGVQRYGAGKWKNILRDPELQPKLISRSNIDLKDKWRNLNVFPGQTANAKARATPKAKPSPSVVPVNATLSPSPVTVITAAATPSPATTPAPVNATTVHNVSPVPQTTQFQTQTPTRRPPQNDDDAKIPPKYNSMIFEALSTLKDTNGSDLSAIVSFIEQKHNLPQNPNFRKTLGSKLRRLVSQGKLDKVQNGYKLKDTAIETKPADDTKPPAPKEEMDPPVSINTSAYDDAMREAAETVAIRIAEAEHRSFLAAAAVKEAERYAKFDEENDAMLKFAEELLEKCKLGGNVRFA* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4812 311 Gene3D - 8 84 - -
Tpr7g4812 311 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Tpr7g4812 311 CDD H15 147 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g4812 311 Pfam linker histone H1 and H5 family 147 210 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g4812 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Tpr7g4812 311 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 309 - -
Tpr7g4812 311 MobiDBLite consensus disorder prediction 215 232 - -
Tpr7g4812 311 SMART h15plus2 142 210 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g4812 311 MobiDBLite consensus disorder prediction 122 142 - -
Tpr7g4812 311 CDD SANT_TRF 6 57 - -
Tpr7g4812 311 Gene3D - 143 228 IPR036388 -
Tpr7g4812 311 SMART sant 4 59 IPR001005 -
Tpr7g4812 311 MobiDBLite consensus disorder prediction 215 236 - -
Tpr7g4812 311 PANTHER SINGLE MYB HISTONE 4 1 309 IPR044597 GO:0003691
Tpr7g4812 311 MobiDBLite consensus disorder prediction 122 136 - -
Tpr7g4812 311 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tpr7g4812 311 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 215 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g4812 311 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Tpr7g4812 311 SUPERFAMILY "Winged helix" DNA-binding domain 146 223 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4812 Tpr-Chr7 56130807 56135099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4812 1 311 Single Myb Histone (SMH) Gene Family AT1G72740 40.952 1.78e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr7g4812 Linker_histone 4.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4812 K09422 - gmx:778177 248.825