Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4804 ATGGAAGGTCGAGGAACTCGTTCCGTTGAAGAAATTTTTGAGGATTTCAAAAGCCGTAGAGCTGGAATCATCAAAGCCCTAACCACTGATGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAGGAGAATCTGTGCTTATATGGATTACTTAATGAGAAGTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGTGCTGGGCATCAACTTTGCTAGAGATGGGATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTTCCCTTGCATTCTACTTTGGAGCCAGATTTTCATTTGATAAAACTGACAGGAAACGTCTATTCAATTTGATTAATGAACTACCAACAGTATATGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAGTCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAACTCAGAGTAGACAACCAAAGGCGGCAGTACAGCCAAAAGATGAGGAGGAAGGACTGGAAGAGCATGATGAAGATGAACATGGAGAAGCCATGTGCGGGGCTTGTGGTGATAGTAATGGTGCTGATGAGTTCTGGATCTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACTCCTGCACGCGCAGAACATATCAAGCAGTACAAGTGCCCTTCATGCAGTAGTAACAAGAGAGCTCGCTAG 756 0.4392 MEGRGTRSVEEIFEDFKSRRAGIIKALTTDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFSFDKTDRKRLFNLINELPTVYEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRQPKAAVQPKDEEEGLEEHDEDEHGEAMCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4804 251 MobiDBLite consensus disorder prediction 142 191 - -
Tpr7g4804 251 SMART PHD_3 197 245 IPR001965 -
Tpr7g4804 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Tpr7g4804 251 MobiDBLite consensus disorder prediction 142 174 - -
Tpr7g4804 251 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 251 - -
Tpr7g4804 251 CDD PHD_AL_plant 198 247 IPR044104 -
Tpr7g4804 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Tpr7g4804 251 PANTHER CPG BINDING PROTEIN 6 251 IPR045104 GO:0006355|GO:0042393
Tpr7g4804 251 SUPERFAMILY FYVE/PHD zinc finger 187 247 IPR011011 -
Tpr7g4804 251 Pfam Alfin 8 136 IPR021998 GO:0006355|GO:0042393
Tpr7g4804 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Tpr7g4804 251 Pfam PHD-finger 197 246 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4804 Tpr-Chr7 56079928 56083093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4804 7 251 Alfin-like Transcription Factor Family AT3G42790 73.878 5.61e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tpr7g4804 Alfin 4.8e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4804 - - gmx:100170700 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2296 5 44043831 44049058 Tpr7g4804 7 56079928 56083093 ECH
Tpr7g4804 7 56079928 56083093 Tpr7g4804 7 56079928 56083093 ECH
Tpr7g4804 7 56079928 56083093 Tpr5g2296 5 44043831 44049058 PCT