Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4803 ATGAAGTGCTTATGTGAGAAAGATTCTGCTCATTCAACACCCCACCATGTTTTTGGATGTCCATCATGGGGAACTTCTTCTGAATCTGAAGTCCAACAAACATCCATGTCCAAAAGTTTGATCTTTAAAGTGGAAGCCCTGCCACAAAAATGCCACAATAGTAAGGCGCTGAGTTTTCAATTTCAAGAACAGGAATCATCTTCAACTCAATCGTCTGGCTCATCACAATCAGGTCAAATTCCTTTTCAGAATAGTTCTTCTACTAGTTCAACATTTAAGAGAACCGAGGAGAATAGTATGGGATGTCTCATTGGGACATCATCTATTGGGACTTCAAATCTCACCATCCATCCTCCACTAGTGGATCACAGCCAATCACTTGCGCATATTGCATTCCACTTTGCTGATCCATGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATATAAGGCTTATGGCATCGTGTCATCAAACTCTGATCAGCCTCTTCATGGCCAACTAATGGAAGCTGCTCCTGTCCGAATTCCCTTGCCATCCGATATGACGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACATAACAAACTCATCAAGGATCGTAAACCATATCTTCACGAGTCTCGCCATGTACATGCATTAAAGAGAGCTAGAGGGGCTGGTGGCCGCTTTCTCAATGCTAAAAAGCTCGAAGAATCAAAGCAAGCTTCACTAAATCATGGCCAAAATGTTTCCACCAGCTATACTTGTTTAAATTTGAATGGAAATATGTCAGAATCTAAAACGCGTGATCTAGTTGAAAATTACCGAGATGGTGCTTCTGCTTCTGATGTCACATATGGATCAAATAAGAATGAAATGTTCCAGCAGCAACAAGAGTTAGAATTCAGGTTATGCAGTTACCCTTCTTCTCAAACTGGAAGGAACATGCAGGAATATGCAGCTGACAAGAGTGTTGGTGCGAATCAACGCCGATTATCGGTTCTCATGTGA 1044 0.4186 MKCLCEKDSAHSTPHHVFGCPSWGTSSESEVQQTSMSKSLIFKVEALPQKCHNSKALSFQFQEQESSSTQSSGSSQSGQIPFQNSSSTSSTFKRTEENSMGCLIGTSSIGTSNLTIHPPLVDHSQSLAHIAFHFADPCYNGLLSASYGQQYKAYGIVSSNSDQPLHGQLMEAAPVRIPLPSDMTEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLEESKQASLNHGQNVSTSYTCLNLNGNMSESKTRDLVENYRDGASASDVTYGSNKNEMFQQQQELEFRLCSYPSSQTGRNMQEYAADKSVGANQRRLSVLM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4803 347 ProSiteProfiles NF-YA/HAP2 family profile. 184 244 IPR001289 GO:0003700|GO:0006355
Tpr7g4803 347 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 17 312 - -
Tpr7g4803 347 PRINTS CCAAT-binding transcription factor subunit B signature 187 209 IPR001289 GO:0003700|GO:0006355
Tpr7g4803 347 PRINTS CCAAT-binding transcription factor subunit B signature 218 241 IPR001289 GO:0003700|GO:0006355
Tpr7g4803 347 SMART cbf3 183 244 IPR001289 GO:0003700|GO:0006355
Tpr7g4803 347 ProSitePatterns NF-YA/HAP2 subunit signature. 189 209 IPR018362 GO:0003677|GO:0016602
Tpr7g4803 347 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 186 241 IPR001289 GO:0003700|GO:0006355
Tpr7g4803 347 MobiDBLite consensus disorder prediction 62 91 - -
Tpr7g4803 347 Gene3D - 184 245 - -
Tpr7g4803 347 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 312 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4803 Tpr-Chr7 56074808 56078614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4803 10 345 CCAAT-HAP2 Transcription Factor Family AT1G17590 37.465 1.52e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tpr7g4803 CBFB_NFYA 8.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4803 K08064 - gmx:100500765 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4803 7 56074808 56078614 Tpr7g4803 7 56074808 56078614 ECH
Tpr7g4803 7 56074808 56078614 Tpr5g2295 5 44040035 44041839 PCT