LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g4728	ATGGCAACAACCTATCACCAACCAGCTTCAATAGAAGAAGTCCGAACCCTATGGATTGGCGATTTACAATACTGGGTAGACGAAAACTACCTCACACACTGTTTCTCCCACACAGGCGAAGTTATCTCAATCAAAATCATCCGTAACAAAATCACCGGTCAACCAGAAGGTTACGGTTTCGTCGAATTCGTATCACACGCCGCCGCAGAAAGAGTTCTTCAAAGTTACAACGGAACTCAAATGCCAGGTACCGAACAAACTTTCCGATTAAATTGGGCTTCATTCGGTATCGGTGAACGCCGTCCCGATGCCGGTCCCGATCATTCGATTTTTGTCGGGGATCTTGCTCCTGATGTAACGGATTATTTACTGCAAGAGACATTTAGGACTCATTATAGTTCTGTTCGTGGCGCGAAAGTTGTTACGGATCCTAATACTGGTAGGAGTAAGGGTTATGGTTTTGTGAAATTTGCTGATGAGAGTGAACGGAATCGAGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCGATGAGGATTAGTGCTGCTACGCCTAAGAAGACTACTGCTTATCAGCAGAATCCTTATGCTGCTGTTGCTGCTGCTGTTGTTGCTCCTGCACCTGCTCCTAAAGCGATATACCCAGTGCCAGCGTACACCGCCCCAGTGAATACAGTTCCACCAGAATATGACGTAAACAATACTACCATTTTTGTCGGTAATTTGGATGTTAATGTCTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGAGAGATTGTTTCTGTCAAAGTACATGCCGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGATTCGAGTTTCTTGGGGTAGGCCTCTAACAGCTAGACAGGACGTACCTGGTGCATGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCGATGTATGCTTATGCTGGATACACTGGCTATGCACAATATCCCCAGCAGGTTGAAGGTGCGCAAGACGCATCAGCCATGTCTGTGCCTACCATGGAACAAAGGGAGGAGCTGTATGATCCTCTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAATTCCATTTTAGGGCGGTCCCTCTGGCACAAAAGTCATTCCTCATCCTTACAACAACAAGCTTAG	1296	0.4576	MATTYHQPASIEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYQQNPYAAVAAAVVAPAPAPKAIYPVPAYTAPVNTVPPEYDVNNTTIFVGNLDVNVSEEELKQNFLQFGEIVSVKVHAGKACGFVQFGARASAEEAIQKMQGKIIGQQVIRVSWGRPLTARQDVPGAWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYTGYAQYPQQVEGAQDASAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNSILGRSLWHKSHSSSLQQQA*	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g4728	431	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	108	187	IPR000504	GO:0003723
	Tpr7g4728	431	SMART	rrm1_1	109	183	IPR000504	GO:0003723
	Tpr7g4728	431	SMART	rrm1_1	238	305	IPR000504	GO:0003723
	Tpr7g4728	431	SMART	rrm1_1	16	91	IPR000504	GO:0003723
	Tpr7g4728	431	CDD	RRM2_SECp43_like	107	186	-	-
	Tpr7g4728	431	Gene3D	-	224	315	IPR012677	-
	Tpr7g4728	431	PANTHER	POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED	6	368	-	-
	Tpr7g4728	431	CDD	RRM3_NGR1_NAM8_like	236	307	-	-
	Tpr7g4728	431	SUPERFAMILY	RNA-binding domain, RBD	106	308	IPR035979	GO:0003676
	Tpr7g4728	431	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	237	309	IPR000504	GO:0003723
	Tpr7g4728	431	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	15	95	IPR000504	GO:0003723
	Tpr7g4728	431	Gene3D	-	98	199	IPR012677	-
	Tpr7g4728	431	CDD	RRM1_SECp43_like	16	96	-	-
	Tpr7g4728	431	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	239	303	IPR000504	GO:0003723
	Tpr7g4728	431	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	17	85	IPR000504	GO:0003723
	Tpr7g4728	431	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	110	175	IPR000504	GO:0003723
	Tpr7g4728	431	SUPERFAMILY	RNA-binding domain, RBD	6	83	IPR035979	GO:0003676
	Tpr7g4728	431	Gene3D	-	14	94	IPR012677	-
	Tpr7g4728	431	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	6	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g4728	Tpr-Chr7	55474366	55478852	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g4728	16	315	Eukaryotic Initiation Factors Gene Family	AT1G22760	25.902	8.95e-24	102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g4728	-		-	cam:101496574	773.852