Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4707 ATGAACTCGGACACGTTACCCTCCTCCACGGCGTCGTTTTGGTGCTATAGTTGCACCCGTTTCGTTCATCTCTTAGACCATAACGACGTCGTTTGTCCACACTGTCAAAACGGTTTCGTTGAAGAGATTCACGCCGGTAATTCTCCGGCGGTTTCACTTTTCGCCGACGGAATTCAAGCTTCCAGGAGACAAAATTCCCGCCGGAGACGTCGTAACGCTGGTGGAAGCCGCTCACCTTTTAATCCTGTGATCGTTCTCCGTGGACCTAGAGAAGATGGCGCCGGCGGTGGCGGTGGTGCCGGTGGAGTTGAAAACGAAGGGAGTAGCTTTGAATTATACTACGAAGATAGCAACGGTAACGGTAACGGCACCGATCTACGACCACTTCCGCCGAATATGTCAGAGTTATTACTCGGTTCTGGATTCGATCGGTTGTTAGAGCAATTCTCACAGATCGAAATCAACGGTTTCGGTAGAGCGGAGAATCCTCCGGCGTCAAAGGCGGCGATAGAATCAATACCAACGGTTGAGATCGCCGAAGCAGAAATAGAAGCCGAAACTCACTGTGCGGTTTGTACAGAAGCGTTTCATCTTGGTTCGGAAGCGCGTAAGATGCCTTGTAAACATCTTTATCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAATTCGTGTCCGGTATGTCGGCACGAGCTACCGTCCGATCAAAATCCTTCGGAGAGTGTAATATCCGGTCAGATCAACGATGAATCCGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCGGTTGGGAGATTTGCCGGTGGTCGGAGAGCCGGCGAGATTCAGTTACCGGTTGTTTACACGGAGATGGATGGCGGTAATACTAATGACTCAAATGAAGATTCTAGAAGATTCTCTTTTGCAGTTGGAAATGATAGAGTTAGAGAAAGACGTGGAATTCGAAGAATTTTTCGAAATTTCTTTTCCTTTTTCGGTAACGTTAATTTAAATCGTAGCTCTTCTCGTTCATTGTTTAGTAGAAGCTCACGTAGTAGAAGAAGCAGAACTACTTGGGTTGCAGAAGAATGA 1083 0.4765 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCQNGFVEEIHAGNSPAVSLFADGIQASRRQNSRRRRRNAGGSRSPFNPVIVLRGPREDGAGGGGGAGGVENEGSSFELYYEDSNGNGNGTDLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVEIAEAEIEAETHCAVCTEAFHLGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPSESVISGQINDESVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPVVYTEMDGGNTNDSNEDSRRFSFAVGNDRVRERRGIRRIFRNFFSFFGNVNLNRSSSRSLFSRSSRSRRSRTTWVAEE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4707 360 SMART ring_2 189 229 IPR001841 -
Tpr7g4707 360 CDD RING-H2_RNF126_like 189 230 - -
Tpr7g4707 360 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Tpr7g4707 360 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Tpr7g4707 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 316 - -
Tpr7g4707 360 Pfam Protein of unknown function (DUF1117) 253 351 IPR010543 -
Tpr7g4707 360 Pfam Ring finger domain 188 230 IPR001841 -
Tpr7g4707 360 SUPERFAMILY RING/U-box 169 236 - -
Tpr7g4707 360 MobiDBLite consensus disorder prediction 56 81 - -
Tpr7g4707 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Tpr7g4707 360 PANTHER OS05G0110000 PROTEIN 8 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4707 Tpr-Chr7 55324937 55326606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4707 125 241 C3H Transcription Factor Family AT5G01980 44.444 2.26e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4707 - - aip:107612938 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4707 7 55324937 55326606 Tpr7g4707 7 55324937 55326606 ECH
Tpr7g4707 7 55324937 55326606 Tpr3g2096 3 19334512 19336045 ECH
Tpr6g4009 6 45292018 45294432 Tpr7g4707 7 55324937 55326606 ECH