Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4656 ATGGTGCAATCTGATGAAGTACGAAAAGGACCATGGACAGAACAAGAAGACTTCAAATTGGTGTCATTTGTTGGATTATTTGGAGACAGAAGATGGGATTTTATTGCTAAGGTATCAGGTTTGAAGGTGGCGGGAGACAGATTGAATAGAACTGGTAAGAGTTGTAGGTTAAGATGGGTTAATTATCTTCATCCTGGTCTTAAACGTGGTAAAATGACTCCTCATGAAGAACGTCTTGTCCTTGAACTTCAATCCAAATGGGGAAATAGGTGGTCAAGAATTGCTCGAAAGTTACCGGGACGAACAGATAACGAGATTAAGAATTACTGGAGAACTCACATGAGGAAGAAGGCTCAGGACAAAAAGAAGGGATCATCAGTTCCATCAACAGAACACCATGCAATGAATTCTCAAGCTTCCAAAGAGGCAGGGGAAGAAATTAGTTTTTATGACACAGGAGGATCAACAATATCAAACCAAAAAAACCAAATTAAACAAGTAGGAGAAGAACATGAACAAGAAATTTCAATGGATGATATATGGAAAGATATTGATCTGTCAGAAGAGAACAGTCTGCATAATGAAGATACAGGCTGCAATAATAATAATAATAATAACATATCTTATTTACCAAAGACTTCTCAATCATGGGAGTATAATTCCACAGACTCACTATGGGTGATGGATGCAGAAAGTATGTTATTCCCTGAGGTTCCTATGATTGATGACCCTTATTTTTCTTGCTATACTAATTAG 756 0.373 MVQSDEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLKVAGDRLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQDKKKGSSVPSTEHHAMNSQASKEAGEEISFYDTGGSTISNQKNQIKQVGEEHEQEISMDDIWKDIDLSEENSLHNEDTGCNNNNNNNISYLPKTSQSWEYNSTDSLWVMDAESMLFPEVPMIDDPYFSCYTN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4656 251 MobiDBLite consensus disorder prediction 129 143 - -
Tpr7g4656 251 CDD SANT 11 63 IPR001005 -
Tpr7g4656 251 Gene3D - 72 144 - -
Tpr7g4656 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tpr7g4656 251 SMART sant 68 116 IPR001005 -
Tpr7g4656 251 SMART sant 8 65 IPR001005 -
Tpr7g4656 251 MobiDBLite consensus disorder prediction 114 144 - -
Tpr7g4656 251 ProSiteProfiles Myb-like domain profile. 4 63 IPR001005 -
Tpr7g4656 251 CDD SANT 71 114 IPR001005 -
Tpr7g4656 251 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Tpr7g4656 251 Pfam Myb-like DNA-binding domain 9 63 IPR001005 -
Tpr7g4656 251 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 240 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr7g4656 251 SUPERFAMILY Homeodomain-like 7 110 IPR009057 -
Tpr7g4656 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 63 IPR017930 -
Tpr7g4656 251 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tpr7g4656 251 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 5 240 - -
Tpr7g4656 251 Gene3D - 9 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4656 Tpr-Chr7 54954521 54956213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4656 1 231 MYB Transcription Factor Family AT5G59780 57.143 5.58e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr7g4656 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4656 K09422 - mnt:21394127 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4656 7 54954521 54956213 Tpr7g4656 7 54954521 54956213 ECH
Tpr3g2029 3 18564508 18566636 Tpr7g4656 7 54954521 54956213 PCT