Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4634 ATGTCACCAAGTTTCATCTTCGATCCTCCCAGTGACGAAGAAATCGAAGAATTATCCGAACACGAATCAGACGAAGAAGAATCAGAACAAGAATCACAATCAGAATCAGAAGGACGAGAATCAGAATCAGAATCAGAAGATGAACGCATAGAGGAATCGCGAGTTTCCAAGAAGAATACAGTGTCTCCATGGGACTTCACAAAATACTCTGAATCAGTTGTTGAAGAACACGCTCGCAGAAGTACAACTTCAGTAGACGATAAAATCTATGCCGTCAGAAAACGTTCAGCGCCGGTTGTTCCTTTGCCTGACTCTGACGATGATAGTGGCTCTGACGCCGAAGCCGATAAACATGAAGATTATAGATCAGAAGAAGAAGATGAAGACGAGGGTAATGCTGGCGACAAAAAGTCCTTTTTTGCTCCTTCTGATGGAACATCTTTCAGTGCTGATTCGTTCTTGCAACTCAATTTGTCTCGTCCTTTACTCAGGGCTTGTGAGGCCTTGACTTTTACTAAACCAACACCAATTCAGGCGGCTTGCATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACTGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTACCGTCCCAAACGCATGAATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCTCAGTATGATTGAGCAGCTTGCTCGTTTTACTGATATAAGGGGGTGCCTGGCTGTTGGTGGTATGCCAATAAAGGAGCAAGAGGCTGCCTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGGCGCATGATAGATCATTTACGCAATTCTATGTCAGTGGATTTGGATGATCTTTCTGTTTTGATCCTTGATGAAGCAGATCGTCTTTTGGAGCTGGGGTTTAGTGCTGAAATTCAGGAAATTGTTCGATTGTGTCCCAAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACTGAGGAGGTTAATGATCTTATTAAACTTTCCCTATCAAAACCCCTACGTCTTTCTGCTGATCCATCTGCAAAACGGCCAACATCCTTGACTGAGGAGGTGGTTAGATTAAGAAACATGCGTGAATCGAATCCGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTCACTTCAAAAGTTATCATTTTCAGTGGAACCAAGCAAACTGCACATAGGTTGAGGATTATATTTGGATTAGCTGGATTGAAAGTTGCTGAGTTTCATGGAAATCTTACTCAGGCCCAACGTCTTGATGCTTTGAACCAATTCAGGATGCAGCAAGTGGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATTATTGGTGTTCAAACAGTTATCAATTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGCAGGAGCTGCTATTACATTTGTTACCGAACGTGACCGATCACTTTTGAAAGCTATTATAAAGAGGGCTGGTTCAAAGCTGAGAAAACGCACTGTTGCTGAGCAATCTATATTAAAATGGTCTAAAACAATTGAGCAAATGGAGGATCAGATTTCTGAAGTACTTGAAGAAGAGAGGGAAGAAAGGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTAAACACAGGGGAGATATCTACTCCCGCCCGAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCGGCAAAAGCAGCAAAGGCATCCTTGGATAAGGAAGACGGTCCTTCTCATAAGGTGGTTAGTGCCCAGCAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAGCGGGAACGAGAGAAAAATATGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGACGAGCAAGATGACAAACCAAGAGGTAAGGGGACAGATAATGAAAAGGCTGGATTGACACTTGCTGATCTTGCTTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCACTAGACTCTGGCAAGATTGTGAAGAAGCCTCAAAAGAAGTCTAATAAATCTAATCCTTCGCGAAAGCCTTCCTCTTCAAGGACAGAAGACATGCGGGAGCAATTCCAAAATGACATGAAGGATAAAAAGCCAAAACAGAAAGGTTCTGGAATAGGAAAGAAGGCAAAGAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2277 0.4343 MSPSFIFDPPSDEEIEELSEHESDEEESEQESQSESEGRESESESEDERIEESRVSKKNTVSPWDFTKYSESVVEEHARRSTTSVDDKIYAVRKRSAPVVPLPDSDDDSGSDAEADKHEDYRSEEEDEDEGNAGDKKSFFAPSDGTSFSADSFLQLNLSRPLLRACEALTFTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQVLSMIEQLARFTDIRGCLAVGGMPIKEQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQEIVRLCPKKRQTMLFSATMTEEVNDLIKLSLSKPLRLSADPSAKRPTSLTEEVVRLRNMRESNPEAVLLAMCSKTFTSKVIIFSGTKQTAHRLRIIFGLAGLKVAEFHGNLTQAQRLDALNQFRMQQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGAAITFVTERDRSLLKAIIKRAGSKLRKRTVAEQSILKWSKTIEQMEDQISEVLEEEREERILRKAEMEATKAENMIKHRGDIYSRPKRTWFVTEKEKKLSAKAAKASLDKEDGPSHKVVSAQQAEDLKLKEKRKREREKNMPRKKRRKLEAAREMLEDDEQDDKPRGKGTDNEKAGLTLADLAYRRAKAVKATKRALDSGKIVKKPQKKSNKSNPSRKPSSSRTEDMREQFQNDMKDKKPKQKGSGIGKKAKKSFKSKSRYKRK* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4634 758 MobiDBLite consensus disorder prediction 1 136 - -
Tpr7g4634 758 SMART helicmild6 406 491 IPR001650 -
Tpr7g4634 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 356 IPR014001 -
Tpr7g4634 758 Coils Coil 529 569 - -
Tpr7g4634 758 MobiDBLite consensus disorder prediction 70 93 - -
Tpr7g4634 758 Coils Coil 11 31 - -
Tpr7g4634 758 MobiDBLite consensus disorder prediction 739 758 - -
Tpr7g4634 758 Coils Coil 615 635 - -
Tpr7g4634 758 MobiDBLite consensus disorder prediction 681 699 - -
Tpr7g4634 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 513 IPR027417 -
Tpr7g4634 758 Pfam Helicase conserved C-terminal domain 389 491 IPR001650 -
Tpr7g4634 758 SMART ultradead3 170 371 IPR014001 -
Tpr7g4634 758 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 302 310 IPR000629 -
Tpr7g4634 758 MobiDBLite consensus disorder prediction 10 33 - -
Tpr7g4634 758 MobiDBLite consensus disorder prediction 598 758 - -
Tpr7g4634 758 MobiDBLite consensus disorder prediction 637 665 - -
Tpr7g4634 758 CDD SF2_C_DEAD 368 485 - -
Tpr7g4634 758 PANTHER RNA HELICASE 307 723 - -
Tpr7g4634 758 PANTHER RNA HELICASE 53 282 - -
Tpr7g4634 758 CDD DEADc_DDX27 162 357 - -
Tpr7g4634 758 Gene3D - 367 570 IPR027417 -
Tpr7g4634 758 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Tpr7g4634 758 MobiDBLite consensus disorder prediction 713 738 - -
Tpr7g4634 758 Gene3D - 112 359 IPR027417 -
Tpr7g4634 758 PANTHER BNAA01G17110D PROTEIN 307 723 - -
Tpr7g4634 758 PANTHER BNAA01G17110D PROTEIN 53 282 - -
Tpr7g4634 758 Pfam DEAD/DEAH box helicase 175 345 IPR011545 GO:0003676|GO:0005524
Tpr7g4634 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 530 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4634 Tpr-Chr7 54745635 54754005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4634 107 508 Eukaryotic Initiation Factors Gene Family AT3G13920 33.333 2.05e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4634 K13181 - gmx:100776684 929.087