Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4616 ATGTCTGAACCTGAATCAGTGAAGAAGGACTTTTCCACCGCGATTCTGGAACGCAAGAAGTCAGCAAACAGGCTTGTTGTGGATGAAGCGCTTAACGATGACAACTCTGTTGTTGTGATGCACCCACAAACTATGGAAAAGTTGGGGCTTTTCAGAGGTGACACCTTACTCATCAAGGGAAAGAAAAGGAAGGATACTATTTGTATAGCTGTTGGTGAGGATACCTGTGAGGAGGCTAGGATTAGGATGAACAAAGTTGTGAGGTCGAATTTGAGGGTTCGACTTGGAGATGTTGTTTCTGTGCACCAGTGTTCTGATGTCAAGTATGGGACACGTGTCCACATTCTTCCTATTGATGATACCATTCAGGGTATCACTGGCAATCTCTTTGACGTTTTCTTGAAACCCTATTTCTTGGAGGCTTATCGTCCCGTCAGAAAGGGAGATCTATTTATTGTGCGGGGAGGGATGAGAAGTGTTGAGTTTAAGGTGATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACCGAGATCTTCTGCGAAGGGGAACCTGTGAAAAGAGAGGATGAAGACAGGCTTGACGAAATCGGTTATGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATTCGTGAATTGGTTGAGCTTCCATTAAGGCATCCACAACTTTTCAAGTCGATCGGTGTGAAACCACCTAAAGGAATTTTGCTATATGGACCCCCGGGTTCTGGAAAGACCTTAATAGCAAGAGCTGTTGCTAATGAAACCGGAGCCTTCTTTATTTGTATTAATGGTCCGGAGATTATGTCCAAAATGGCTGGAGAGAGTGAAAGCAATCTTCGGAAAGCATTTCAGGAAGCCGAAAAGAATGCACCGTCCATCATCTTTATGGATGAAATTGATTCTATTGCACCCAAGCGGGACAAGACAAACGGTGAAGTCGAAAGAAGGATAGTTTCACAACTTTTAACTCTAATGGATGGATTAAAATCTCGTGCTCATGTTATTGTTATGGGCGCCACTAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGACAGAGAAATCGATATAGGTGTTCCAGATGAGATCGGGCGACTTGAAGTCGTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAGAGAATTTCGAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCCCTTTGCACCGAAGCTGCTTTGCAATGCATTAGAGAGAAGATGGACCTCATTGACTTAGAGGATGAGACCATTGATGCTGAGATACTGAATTCCATGGCAGTTACAAATGAGCATTTCCATACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAATGTCAGCTGGGAGGACGTCGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCGGAAAAGTTTGAGAAGTTTGGGATGTCACCATCAAAAGGAGTTCTCTTCTATGGTCCTCCGGGATGTGGAAAAACTTTGTTAGCCAAAGCAATTGCCAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGACCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTAGGGAAATTTTTGACAAGGCTAGACAATCGGCTCCATGTGTCCTCTTTTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGGGGCAGCAATGGGGATGCTGGTGGTGCTGCCGACAGAGTTCTAAATCAACTTTTGACAGAGATGGATGGCATGTCTGCCAAAAAGACCGTATTCATTATTGGAGCCACTAACAGACCTGACATCATTGATTCAGCACTTCTCCGGCCAGGCCGTCTAGATCAGTTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATTCGATCTTCAAGTCCTGCTTGAGGAAGTCACCGGTCGCAAAAGATGTTGATTTGAGAGCATTGGCTAAGTATACTCAAGGTTTTAGTGGTGCCGACATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAGACATCGATAAGGACATAGAGCAACAGAGGAAGAGGAAGGAAAACCCCGAGGCAATGGATGAAGACTTTGTTAACGATGAAGTTGCAGAGATTAAGGCGGCTCATTTTGAAGAGTCAATGAAGTATGCACGTAGGAGTGTCAGTGACGCTGATATACGTAAATACCAGGCATTTGCTCAGACGTTGCAACAATCTAGGGGATTCAAAAGTGAGTTTAAGTTTGCAGATTCCGGAAATAGGACTACCGGATCCGACCCTTTTGCAACAACTACTGCCACTGCTGGGGCCGATGAAGATGATCTTTATAGTTAG 2409 0.4442 MSEPESVKKDFSTAILERKKSANRLVVDEALNDDNSVVVMHPQTMEKLGLFRGDTLLIKGKKRKDTICIAVGEDTCEEARIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGTRVHILPIDDTIQGITGNLFDVFLKPYFLEAYRPVRKGDLFIVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFICINGPEIMSKMAGESESNLRKAFQEAEKNAPSIIFMDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVVRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDLIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDVGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSNGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHSIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIREDIDKDIEQQRKRKENPEAMDEDFVNDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFKSEFKFADSGNRTTGSDPFATTTATAGADEDDLYS* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4616 802 MobiDBLite consensus disorder prediction 776 802 - -
Tpr7g4616 802 CDD AAA 478 645 - -
Tpr7g4616 802 ProSitePatterns AAA-protein family signature. 339 357 IPR003960 GO:0005524|GO:0016887
Tpr7g4616 802 Gene3D - 2 106 - -
Tpr7g4616 802 Gene3D - 462 645 IPR027417 -
Tpr7g4616 802 SMART CDC48_N_2 24 107 IPR003338 -
Tpr7g4616 802 SMART CDC48_2_2 124 190 IPR004201 -
Tpr7g4616 802 Gene3D - 649 758 - -
Tpr7g4616 802 Gene3D - 370 461 - -
Tpr7g4616 802 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 24 762 IPR005938 GO:0016787
Tpr7g4616 802 Pfam ATPase family associated with various cellular activities (AAA) 239 368 IPR003959 GO:0005524|GO:0016887
Tpr7g4616 802 Pfam ATPase family associated with various cellular activities (AAA) 512 645 IPR003959 GO:0005524|GO:0016887
Tpr7g4616 802 ProSitePatterns AAA-protein family signature. 615 633 IPR003960 GO:0005524|GO:0016887
Tpr7g4616 802 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 2 776 - -
Tpr7g4616 802 Gene3D - 107 203 - -
Tpr7g4616 802 Gene3D - 204 368 IPR027417 -
Tpr7g4616 802 SMART AAA_5 508 647 IPR003593 -
Tpr7g4616 802 SMART AAA_5 235 371 IPR003593 -
Tpr7g4616 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 759 IPR027417 -
Tpr7g4616 802 Pfam AAA+ lid domain 667 708 IPR041569 -
Tpr7g4616 802 Pfam AAA+ lid domain 391 433 IPR041569 -
Tpr7g4616 802 SUPERFAMILY Cdc48 domain 2-like 106 198 IPR029067 -
Tpr7g4616 802 SUPERFAMILY ADC-like 21 104 IPR009010 -
Tpr7g4616 802 CDD AAA 205 368 - -
Tpr7g4616 802 MobiDBLite consensus disorder prediction 776 790 - -
Tpr7g4616 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 460 IPR027417 -
Tpr7g4616 802 Pfam Cell division protein 48 (CDC48), domain 2 125 189 IPR004201 -
Tpr7g4616 802 Pfam Cell division protein 48 (CDC48), N-terminal domain 24 105 IPR003338 -
Tpr7g4616 802 PANTHER AAA-FAMILY ATPASE 2 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4616 Tpr-Chr7 54589694 54593287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4616 441 704 Calmodulin-binding Proteins AT3G56690 48.864 5.77e-81 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4616 K13525 - gmx:100783508 1471.45