Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4583 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCAGCAACAATGATTTGTTGTGCTGATGAAGCAGCTTTGTGTGCTAAATGTGACATTGAAGTTCATGCTGCTAATAAGCTTGCAAGCAAGCATCAAAGGCTTCATCTTCAATCTCTCTCTAGCAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTGAGGATTGTGATGATTCTATTCATTTAGCCGGTAGTCTTTCCGCAAACCATCAGCGCTTCCTTGCGACCGGTATCCGAGTTGCCATGAGTTCTAGTTGCGCCAAAGACGACGACAAAACTCACATGGAGCCACCTAATAGGAAGAACACAGAACAAGTTTCTCTTGAAACACCTTCTCAGCAAGTACCTGACTTTACACCCTCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGATTTTGATTCCCATGACAAAAAGGGATCCATGCAATTTGGAGAGATGGAATGGTTCACTGAGGATGGTCTTTTTGGTGAAGAATTTACTCAAGAAGCCATGGCTGCAGCTGAAGTGCCTCAACTTCCAATGACTTATGCTAGCAACAATTTTTCATCACATAGAAATTCAAAGTCAAACATGTCTAACAAAAAGCCTAGAATTGAACTCATACATGATTATAATTATGATGATGAAGATGAGTTGTTCACTGTGCCTGATCTTGGATGA 735 0.4095 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLHLQSLSSKLPRCDICQDKAAFIFCVEDRALFCEDCDDSIHLAGSLSANHQRFLATGIRVAMSSSCAKDDDKTHMEPPNRKNTEQVSLETPSQQVPDFTPSWGVDDLLELADFDSHDKKGSMQFGEMEWFTEDGLFGEEFTQEAMAAAEVPQLPMTYASNNFSSHRNSKSNMSNKKPRIELIHDYNYDDEDELFTVPDLG* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4583 244 CDD Bbox1_BBX-like 57 98 - -
Tpr7g4583 244 Gene3D Classic Zinc Finger 1 96 - -
Tpr7g4583 244 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Tpr7g4583 244 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 244 - -
Tpr7g4583 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr7g4583 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Tpr7g4583 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tpr7g4583 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Tpr7g4583 244 CDD Bbox1_BBX-like 5 47 - -
Tpr7g4583 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 244 - -
Tpr7g4583 244 MobiDBLite consensus disorder prediction 111 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4583 Tpr-Chr7 54297948 54300069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4583 1 162 Orphan Transcription Factor Family AT1G06040 63.743 6.77e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr7g4583 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4583 - - vun:114183169 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4583 7 54297948 54300069 Tpr3g2206 3 20667427 20670478 PCT