Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4566 ATGGATTCCGAAGATGATATGCATGATGCCAACGATATTGAGTCTCTCGATGACGATTTCTACAGTGGTGAAACCGAAGATGTTCCTATGGATTACTACAGCGATGATTCTGATAATGATTACTATGATGATGGTGGTGATGATTCTGACCCTGCTGAGTCTCGTCGAACAGAGCAAAGTTTTACCATATTGAAAGAATCAGATATTCGACAACGGCAGGAAGATGATATCAGTAGATTAGCAGCAGTTCTTTCCTTACCGCAGGTTGCTGCAAGCATCCTACTTCGTCATTATCATTGGAGCGTCAGTAAGGTTAATGATGAATGGTTTGCTGACGAAGGTGAAGTTCGAAGAACAGTTGGATTGTTGGAGAAGCCAGTTTACGTGAATCTTGATGCCGAAGAGCTTACTTGCGGCATCTGTTTTGAAGATTATCCTCTTTCTAAGATTCTAACGGCTTCTTGCGGTCATCCATTCTGTTTTTCATGCTGGGGAGGATATATTACGACTTCAATTAACGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCTGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGATCGTTACCTTCTTAGATCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAGCATGCTGTTAATTTTGATGCTGGAACTGAAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAAGAGGCTCACCGTCCAGTGGATTGTGACACCGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATCGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGGGCATGGACAGAACATGGTGAAAGGACCGGGGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTACGAGCGATGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACAACAGATGCAAACTGTTCATCTTGGGAAGCTTAGTGACATACAGTGCCAACCTGAGACGCAGCTTAAGTTCATAACTGATGCCTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTACCCGATAATGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGCATTCCTCAGTAGTGATGAGGGCCCATCTAAAGACTTCAATGATTTTCGTACAAAACTAACTGGATTGACTGCTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTGGAGAATGGTTTATGTGACGTGGATAGCAATGGAGCTACTTCCAGCAAAGCAACAAGTTCAAAAACTGCTGCATGGAGCGGTAAGGGAAAAGGCGGAAAAGGAAAGGGGACACCTAAAGCTTTGTCCAGCAGAATAACTGATGATCTTTGGGCTTGTGAGCAATGTACCTATGCAAATGCCAGATCGGCCACCACATGCCATATGTGCAATCGACAGCGTCGATGA 1767 0.4261 MDSEDDMHDANDIESLDDDFYSGETEDVPMDYYSDDSDNDYYDDGGDDSDPAESRRTEQSFTILKESDIRQRQEDDISRLAAVLSLPQVAASILLRHYHWSVSKVNDEWFADEGEVRRTVGLLEKPVYVNLDAEELTCGICFEDYPLSKILTASCGHPFCFSCWGGYITTSINDGPGCLMLRCPDPACGAAVDQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDAGTENYDVSCLCSYSFCWNCTEEAHRPVDCDTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWTEHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHLGKLSDIQCQPETQLKFITDAWLQIVECRRVLKWTYAYGYYLPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELQAFLSSDEGPSKDFNDFRTKLTGLTAVTRNYFENLVRALENGLCDVDSNGATSSKATSSKTAAWSGKGKGGKGKGTPKALSSRITDDLWACEQCTYANARSATTCHMCNRQRR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4566 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Tpr7g4566 588 MobiDBLite consensus disorder prediction 1 47 - -
Tpr7g4566 588 SUPERFAMILY RING/U-box 207 276 - -
Tpr7g4566 588 CDD RING-HC_RBR_TRIAD1_like 138 188 - -
Tpr7g4566 588 SUPERFAMILY Ran binding protein zinc finger-like 561 587 IPR036443 -
Tpr7g4566 588 Pfam Ariadne domain 356 519 IPR045840 -
Tpr7g4566 588 MobiDBLite consensus disorder prediction 530 554 - -
Tpr7g4566 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 220 IPR013083 -
Tpr7g4566 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Tpr7g4566 588 Gene3D - 559 588 - -
Tpr7g4566 588 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 -
Tpr7g4566 588 Pfam IBR domain, a half RING-finger domain 207 269 IPR002867 -
Tpr7g4566 588 ProSiteProfiles TRIAD supradomain profile. 134 347 IPR044066 -
Tpr7g4566 588 ProSiteProfiles Zinc finger RING-type profile. 138 182 IPR001841 -
Tpr7g4566 588 MobiDBLite consensus disorder prediction 1 58 - -
Tpr7g4566 588 Gene3D - 265 521 - -
Tpr7g4566 588 SUPERFAMILY RING/U-box 288 336 - -
Tpr7g4566 588 SMART ibrneu5 207 269 IPR002867 -
Tpr7g4566 588 SMART ibrneu5 282 343 IPR002867 -
Tpr7g4566 588 SUPERFAMILY RING/U-box 134 219 - -
Tpr7g4566 588 ProSiteProfiles Zinc finger RanBP2 type profile. 560 588 IPR001876 -
Tpr7g4566 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4566 Tpr-Chr7 54154442 54161366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4566 17 587 ARIADNE family AT1G65430 69.655 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4566 K11968 - gmx:100810427 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4566 7 54154442 54161366 Tpr3g2187 3 20450756 20458158 PCT