Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4545 ATGGTAGGTGGATATGATAAAGAAGAGAAAGCTGCAAGGGCTTATGATTTAGCTGCACTAAAGTATTGGGGGACATCCACCACTACAAATTTTCCAATAAGTAACTATGAGAAGGAAGTTGAAGATATGAAGCACATGACTAGACAAGAATTTGTTGCCGCCATAAGAAGAAAGAGCAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGAATTGGCAGAGTAGCAGGAAATAAGGATCTTTACTTAGGAACTTTTGGTACTGAAGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTTAGAGGATTAAACGCAGTAACAAACTTCGACATGAATCGTTACGACGTGAAAGCGATTCTTGAAAGTAATACTCTTCCAATAGGAGGAGGTGCTGCAAAACGGTTAAAAGAAGCTCAAGCTCTAGAATGTTCTAGAAAAAGAGAACAAGAGATGATAGCATTAGGCTCTAGTACTACTTTTCAATATGGAGGAATTGGAGGAGAAGGATCTTCAAGTTCAAGTAGGATGCAATTACAAGGTTACCCTTTAATGCAATTTGAACCTTTATATGAGAGTAGTATTCAAGATCCGTCGTCGTTTAATCAGCAGAGTTATATTCAAACTCAGCTTCAGTTGCATCAACAACAGCAAAGTGGAGGATTTTATAATTATAATGGGAATTACAATATTCAGAATCAGCAGGGTTTGATGAATATGGGTGTCATGGAGAATAATGGTGGTGGAGGAGGGTATGTTGGGAATAATAATATTATTAACGTAGGTGGAAGTGGAGGGGAGGAGGTTGGGTTTGTTAAGGTTGATTATGACATGGCTTCCGGAGGTTATGGAGGTTGGTCAGCGGCCGATGCTTCAAATGTTGGTGCAGCTAGTGTTTTTACAATGTGGAATGATTTGACTAATTAA 972 0.3951 MVGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREQEMIALGSSTTFQYGGIGGEGSSSSSRMQLQGYPLMQFEPLYESSIQDPSSFNQQSYIQTQLQLHQQQQSGGFYNYNGNYNIQNQQGLMNMGVMENNGGGGGYVGNNNIINVGGSGGEEVGFVKVDYDMASGGYGGWSAADASNVGAASVFTMWNDLTN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4545 323 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
Tpr7g4545 323 SUPERFAMILY DNA-binding domain 2 34 IPR016177 GO:0003677
Tpr7g4545 323 ProSiteProfiles AP2/ERF domain profile. 1 32 IPR001471 GO:0003700|GO:0006355
Tpr7g4545 323 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 319 - -
Tpr7g4545 323 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Tpr7g4545 323 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 3 319 - -
Tpr7g4545 323 SUPERFAMILY DNA-binding domain 67 127 IPR016177 GO:0003677
Tpr7g4545 323 Gene3D AP2/ERF domain 1 34 IPR036955 GO:0003700|GO:0006355
Tpr7g4545 323 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Tpr7g4545 323 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Tpr7g4545 323 SMART rav1_2 1 38 IPR001471 GO:0003700|GO:0006355
Tpr7g4545 323 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4545 Tpr-Chr7 53961547 53963145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4545 2 320 AP2-EREBP Transcription Factor Family AT3G20840 62.327 4.75e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr7g4545 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4545 K09285 - gmx:100788471 368.237