Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4537 ATGATTGTGGCTAGTAAGATTACTCAATTTGTCCCAAGTAGGGTTAGAACAGAATCTTCTCATCATGTTATTTCAAAGTCATGGCAAAACACTGAAGAAGAGGAGTTTGATTGGGAAGATCTGCGTCCAACTCTATTAGACAACACTAGAAATAATAGTTTCCTGCAACCAACTATTGGTTTCTCCACAGAAAAGCCTGTTACTGTTGCAGCAAGTTCAATGTCAAGGATGTTTCCTGGTCTCAAGCCTAATATTGAGTACCGTCCACCAATCTTGGCGGCAACTTTTGAAAATGTGCATGCTCCTCGTCCTCCCTGCCTAAATCCTATTGAAAATCTGCAGGCTCCTCGTCCTCCTTGCTTAAATCCTATTAGATTTCCATTGAACAATCTTGTTATGAATCCATCTGAATCAACAAATGCTAATAGTTATCGGACCCCTTTTCAAAGACATACGCACCCTATTATGCCAGGCCAAAGAATCATCACAAACAACCCTTTACATTTTCCTCCAGCCAGCGGCCCACATGCTCCTCCGCCCCAGATGCTACCTCATCCCAATCCTTTCGTATCAAGCGAACAGCCATCTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCTCCTACACAGGATTTTGTTGGCATTGGCATTGAGTTTGATCCCAATATTCTAAAGGTTCGTCACGAATCTGTAATCAGTGCCTTATATGGTAAGTTGCCTAGACAGTGCAAAACTTGTGGCCTACGATTCAAATCACAAGATGAGCACAGCAGACACATGGATTGGCATGTGACTAAGAACCGTAACCGTATTAGTATGTCTAAAAACCTTAAGCTGAAACCCTCTCGCAAGTGGTTTGTCAGTGAGACGATGTGGCTCAGCGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGCTCCAGGTTTTTTGCCAACTGAGGAAAAGAAAGAAGACAAAGAATTCGCAGTTCCTGCTGATGAGGACCAGAAAACATGCTCTCTATGTGGAGAGCATTTCGATCAGTTTTACAGTGATGATACAGAGGATTGGATGTACAGAGGAGCTGTTTACCTTAATGCGCCCAATGGAATAATAACAGCCGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACTACATCCCCATCTCAAGATTTTGTGATGGATGGAGAAGGCAATCAAAGAAAACGTATGCAGCAAGGCACATATGATGAAGGCAATCAAAGAAAACGAATGCGAACAAGTTTTTCGCAAATTCATCCTTTTTAG 1326 0.4253 MIVASKITQFVPSRVRTESSHHVISKSWQNTEEEEFDWEDLRPTLLDNTRNNSFLQPTIGFSTEKPVTVAASSMSRMFPGLKPNIEYRPPILAATFENVHAPRPPCLNPIENLQAPRPPCLNPIRFPLNNLVMNPSESTNANSYRTPFQRHTHPIMPGQRIITNNPLHFPPASGPHAPPPQMLPHPNPFVSSEQPSVGYSNLINSLMAQGVISLANQAPTQDFVGIGIEFDPNILKVRHESVISALYGKLPRQCKTCGLRFKSQDEHSRHMDWHVTKNRNRISMSKNLKLKPSRKWFVSETMWLSGAEALGTESAPAPGFLPTEEKKEDKEFAVPADEDQKTCSLCGEHFDQFYSDDTEDWMYRGAVYLNAPNGIITAGMDRSQLGPIIHAKCRSESTTSPSQDFVMDGEGNQRKRMQQGTYDEGNQRKRMRTSFSQIHPF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4537 441 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 21 399 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tpr7g4537 441 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 21 399 - -
Tpr7g4537 441 MobiDBLite consensus disorder prediction 408 441 - -
Tpr7g4537 441 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4537 Tpr-Chr7 53893909 53895679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4537 190 433 C2H2 Transcription Factor Family AT4G04885 59.514 8.91e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g4537 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4537 K14400 - gmx:100794796 354.369