Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4536 ATGGCTGCAGCAGCAACTTCATACAACGGACGATCATGGCAGAATACCGAAGAGGATGAGTTCGATTGGGATACTTTTAAAAGGAGACATCCCGTTAAGTTACCTTGTCAGTTACCACATGGTGCTTCTATACATGCACGCCCTGTTATGCGACTCCCTTCGCCCGACCAAAGTTTACATTTTCCTCCGGCCGCACGCCCTGTTATGCGACTCCCTTCGCCCAACCAAAGTTTACATTTTCCTCTGGCCGCACGCCCTGTTATGCGACTCCCTTTGCCCGGCCAAAGTTTACATTTTCCTCCGGCTGGCGGCCCACATGCTCCGCCCCAGATGCTACCTCGTCCGAATCCTCCTTTTGTGTCAAGCCAACATCCATCTGTTGGATATTCTAGTTTGATTAATTCACTCATGGCCCAAGGTGTAATATCATTGGCTAATCAAACTCCTACACAGGATTTTGTTGGCATTGAGTTTGATCCCAATATTCTAAAGGTTCGTCACGAATCTGTAGTCAGTGCCTTATATGTGAGACGATGTGGCTCAGCGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGCTCCAGGTTTTTTTGCCAACTGAGGAAAAGAAAGAAGACAAAGAATTGGCAGTTCCTGCTGAAGAGGACCAGAAAACATGCTCTCTATGTGGCGAGTATTTCGATCAGTTTTACAGTGATGAGACAGAGGATTGGATGTACAGAGGAGCTGTTTACCTTAATGCGCCCAATGGAATAATAACAGCCGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACTACATCCCCATCTCAAGATTGTGTGATGGATGGAGAAGGCAATCAAAGAAAACGTATGCAGCAAGGCACATATGATGAAGCCAGCTCTTTACCAACATTAATTCTTTTACCACTGCCTTTAGTCTTTGAAGATGGTGGTGGAAGAATTTCTATTTCCTCAGGAATATTGGAACCAATATACTAG 1008 0.4583 MAAAATSYNGRSWQNTEEDEFDWDTFKRRHPVKLPCQLPHGASIHARPVMRLPSPDQSLHFPPAARPVMRLPSPNQSLHFPLAARPVMRLPLPGQSLHFPPAGGPHAPPQMLPRPNPPFVSSQHPSVGYSSLINSLMAQGVISLANQTPTQDFVGIEFDPNILKVRHESVVSALYVRRCGSAVQRHWELNQLQLQVFLPTEEKKEDKELAVPAEEDQKTCSLCGEYFDQFYSDETEDWMYRGAVYLNAPNGIITAGMDRSQLGPIIHAKCRSESTTSPSQDCVMDGEGNQRKRMQQGTYDEASSLPTLILLPLPLVFEDGGGRISISSGILEPIY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4536 335 MobiDBLite consensus disorder prediction 276 295 - -
Tpr7g4536 335 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 9 179 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tpr7g4536 335 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 197 276 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tpr7g4536 335 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 9 179 - -
Tpr7g4536 335 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 197 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4536 Tpr-Chr7 53889276 53891016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4536 120 295 C2H2 Transcription Factor Family AT4G04885 42.857 2.78e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4536 K14400 - gmx:100794796 228.794