Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4535 ATGATTGTAGTCCCAAGTAGAGCATCATATTCATGGCAGAACACTGACGAGGTGGAATTTGATTGGTCAGATATGTTGCACGGTGTTAACAACAAAAACTTGCATCAGTTACCTAAATTTCAGGTTTTTCCGTCTCAGCATCCAGCCGCAGCAGTAGCATCACAAGGACATGCACGCCCTGTCACACCACAATTTTTTCCATCTCAGGATACGGCGGCAGCAGCAGTTCGTTACGGTGCTTCTATAAGTAACCCCCTGCACCCTGTTATGCGACTCCTTTTGCCAGGCCAAAGTTTAAATTTTCCTCCAGCCTGTGGCTCACATGCTCCGATGCTACCTCGTCCGAATCCTCCTTTTGTGTCAAGCCATGCTCCAATACTACCTCGTCCGAATCCTTCTTTTGTGTCAAGCCAACATCCACCTGCTGTTGGATATTCTGATTTGATCAATTCACTCATGGCCCAAGGTGTAATATCATTAGCGAATCAAGCTCCTACACAGGATTTTGTTGGCATTGGCATTGAGTTTGATCCGGATATTCTGAAGGTTCGTCATGAATCTGTAGTCAGTGCCTTATATGGTAAGCTTCCTAGACAGTGCAAAACTTGTGGCCTAAGATTCAAATCACAAGATGAGCATAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTAACCGTATTAGTATGTCTAAAAACCATAAGCTGAAACCCTCTCGCAAGTGGTTTGTCAGTGAGACGATGTGGCTCAGCGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGCTCCAGGTTTTTTGCCAACTGAGGAAAAGAAAGAAAACAAAGAGTTGGCAGTTCCTGCTGAAGAGGACCAGAAAACATGCTCTCTATGTGGAGAACATTTCGATCAGTTTTACAGTGATGAGACAGAGGATTGGATGTACAGAGGAGCTGTTTACCTTAATGCGCCCAATGGAATAATAACAACCGGCACGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACTACATCCCCATCTCAAGATTTTGTGATGGATGGAGAAGGCAATCAAGGAAAACGTATACAGCAAGGCACATATGATGAAGGCAATCAAAGAAAACGAATGCGAACCAATTTTTCGCAAATTCATCCTTTTTAG 1164 0.4442 MIVVPSRASYSWQNTDEVEFDWSDMLHGVNNKNLHQLPKFQVFPSQHPAAAVASQGHARPVTPQFFPSQDTAAAAVRYGASISNPLHPVMRLLLPGQSLNFPPACGSHAPMLPRPNPPFVSSHAPILPRPNPSFVSSQHPPAVGYSDLINSLMAQGVISLANQAPTQDFVGIGIEFDPDILKVRHESVVSALYGKLPRQCKTCGLRFKSQDEHSSHMDWHVTKNRNRISMSKNHKLKPSRKWFVSETMWLSGAEALGTESAPAPGFLPTEEKKENKELAVPAEEDQKTCSLCGEHFDQFYSDETEDWMYRGAVYLNAPNGIITTGTDRSQLGPIIHAKCRSESTTSPSQDFVMDGEGNQGKRIQQGTYDEGNQRKRMRTNFSQIHPF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4535 387 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Tpr7g4535 387 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 9 345 - -
Tpr7g4535 387 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 9 345 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4535 Tpr-Chr7 53881815 53883204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4535 136 379 C2H2 Transcription Factor Family AT4G04885 59.919 3.73e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g4535 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4535 K14400 - gmx:100794796 366.696