Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4510 ATGAACTCGGACACGTTACCCTCCTCCACGGCGTCGTTTTGGTGCTATAGTTGCACCCGTTTCGTTCATCTCTTAGACCATAACGACGTCGTTTGTCCACACTGTCAAAACGGTTTCGTTGAAGAGATTCACGCCGGTAATTCTCCGGCGGTTTCACTTTTCGCCGACGGCATTCAAGCTTCCAGGAGACAAAATTCCCGCCGGAGACGTCGTAACGCTGGTGGAAGCCGCTCACCTTTTAATCCTGTGATCGTTCTCCGTGGACCTAGAGAAGATGGCACCGGCGGTGGCGGTGGTGGTGGTGCCGGTGGAGTTGAAAACGAAGGGAGTAGCTTTGAATTATACTACGAAGATAGCAACGGTAACGGTAACGGCACCGATCTACGACCACTTCCGCCGAATATGTCAGAGTTATTACTCGGTTCTGGATTCGATCGGTTGTTAGAGCAATTCTCACAGATCGAAATCAACGGTTTCGGTAGAGCGGAGAATCCTCCGGCGTCAAAGGCGGCGATAGAATCAATACCAACGGTTGAGATCGCCGAAGCAGAAATAGAAGCCGAAACTCACTGTGCGGTTTGTACAGAAGCGTTTCATCTTGGTTCGGAAGCGCGTAAGATGCCTTGTAAACATCTTTATCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAATTCGTGTCCGGTATGTCGGCACGAGCTACCGTCCGATCAAAATCCTTCGGAGAGTGTAATATCCGGTCAGATCAACGATGAATCCGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCGGTTGGGAGATTTGCCGGTGGTCGGAGAGCCGGCGAGATTCAGTTACCGGTTGTTTACACGGAGATGGATGGCGGTAATACTAATGACTCAAATGAAGATTCTAGAAGATTCTCTTTTGCAGTTGGAAATGATAGAGTTAGAGAAAGACGTGGAATTCGAAGAATTTTTCGAAATTTCTTTTCCTTTTTCGGTAACGTTAATTTAAATCGTAGCTCTTCTCGTTCATTGTTTAGTAGAAGCTCACGTAGTAGAAGAAGCAGAACTACTTGGGTTGCAGAAGAATGA 1089 0.4775 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCQNGFVEEIHAGNSPAVSLFADGIQASRRQNSRRRRRNAGGSRSPFNPVIVLRGPREDGTGGGGGGGAGGVENEGSSFELYYEDSNGNGNGTDLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVEIAEAEIEAETHCAVCTEAFHLGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPSESVISGQINDESVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPVVYTEMDGGNTNDSNEDSRRFSFAVGNDRVRERRGIRRIFRNFFSFFGNVNLNRSSSRSLFSRSSRSRRSRTTWVAEE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4510 362 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Tpr7g4510 362 SUPERFAMILY RING/U-box 171 238 - -
Tpr7g4510 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 238 IPR013083 -
Tpr7g4510 362 CDD RING-H2_RNF126_like 191 232 - -
Tpr7g4510 362 Pfam Ring finger domain 190 232 IPR001841 -
Tpr7g4510 362 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Tpr7g4510 362 Pfam Protein of unknown function (DUF1117) 255 353 IPR010543 -
Tpr7g4510 362 SMART ring_2 191 231 IPR001841 -
Tpr7g4510 362 MobiDBLite consensus disorder prediction 56 81 - -
Tpr7g4510 362 PANTHER OS05G0110000 PROTEIN 8 318 - -
Tpr7g4510 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4510 Tpr-Chr7 53724955 53726590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4510 127 243 C3H Transcription Factor Family AT5G01980 44.444 1.87e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4510 - - aip:107612938 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4510 7 53724955 53726590 Tpr3g2096 3 19334512 19336045 PCT