Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4496 ATGGGTACAATGACCGTGTTGTACATTGTGTCTCTAATCATGTCATTAACAATGTGGATGATGGTAGTAGAGGCTAGAATCCCCGGTGTTTACAACGGCGGTTCATGGCAAACCGCTCACGCCACTTTTTACGGCGGTTCTGATGCTTCCGGCACCATGGGTGGAGCATGTGGTTATGGAAACTTATACAGTCAAGGTTATGGAGTTAACACTGCAGCATTAAGTACAGCACTTTTCAACAGTGGACTTAGCTGTGGTTCTTGCTTTGAATTGAAATGTGCAAATGATAAACAATGGTGTCACTCTGGTAGTCCTTCCATTTTCATTACAGCTACTAATTTCTGTCCTCCTAATTTTGCTCAAGCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGCCCTCATTTCGACCTCGCCATGCCTATGTTCCTTAAAATCGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTATCGCCGGGTGCCGTGTAGGAAGCGCGGTGGGATCAGATTCACAATTAACGGATTCCGTTACTTTAACTTAGTACTAATCAGCAACGTCGCGGGTGCAGGTGATATCGTGCGCACTTATGTTAAAGGCTCAAGAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCTGTTTTAGTGGGTCAGTCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCCCCACAAAATTGGCAATTTGGTCAAACTTTTACCGGAAAGAATTTTCGTGTTTGA 789 0.4588 MGTMTVLYIVSLIMSLTMWMMVVEARIPGVYNGGSWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQASDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIAPQNWQFGQTFTGKNFRV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4496 262 Pfam Lytic transglycolase 71 158 IPR009009 -
Tpr7g4496 262 Gene3D - 168 260 IPR036749 -
Tpr7g4496 262 PANTHER EXPANSIN 6 261 - -
Tpr7g4496 262 SMART dpbb_1 71 158 IPR007112 -
Tpr7g4496 262 Gene3D - 22 164 IPR036908 -
Tpr7g4496 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Tpr7g4496 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Tpr7g4496 262 SUPERFAMILY Barwin-like endoglucanases 35 186 IPR036908 -
Tpr7g4496 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Tpr7g4496 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 168 IPR007112 -
Tpr7g4496 262 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Tpr7g4496 262 PANTHER EXPANSIN-A15 6 261 IPR002963 GO:0009664
Tpr7g4496 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Tpr7g4496 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Tpr7g4496 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Tpr7g4496 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Tpr7g4496 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Tpr7g4496 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4496 Tpr-Chr7 53613100 53615734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4496 4 262 Expansin Gene Family AT2G39700 82.239 1.23e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4496 - - gmx:100809139 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4496 7 53613100 53615734 Tpr3g2075 3 19116377 19120125 PCT