Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4478 ATGTTTATTAGAAGGAGAAAAAGAGGAAACAAAATGTACAAGTATCTTTGCTCCGTGGAGAAGGAGAAAAAGAGAAGACCTAAAATGGATTACATGAAGATACTTCAAAAAGACATTACTCCACATATGAGAGGACAATTGATTGATTGGTTAGCAGAACTTGCAGACAATTACAATCTTCTCCCTAATGTCATTTATCTTGCTGTTTCATATATCGATAGGTACCTATCTTTTCACCCTATAAGAAAGGTTAGGCTTCAATTGTTGGGTGTTACATCCATGTACATTGCATCGAAGTATGAAGATCTTAGCACACACAATGTGGAAACTTTCTCCGTAACTACATGTAATTATTATGACAAGGAAGAGGTTCTAGAGATGGAAAATAAAATACTCAAGACCCTAGATTTTGATCTGAGCAGCCCTACTATTATGACTTTTCTAGAGAAGTTTGAAGAAATTGCTTGTGAGGAAAATAATGCTTCAAGTTGGAAGTTTAAGTTTTTGACAGAATATCTTGGTGAGCTAAGTTTATTGGAATATGAATGTTTGAAGTTCTTGCCTTCCTTGGTGGCTGCTTCTATCACATTGCTTGCTAAATTCATTGTTTGGCCTGAAAAACGTCCATGTTGGACATCAGCACTGGAAGAATACTCTGAGTATAGCTCATTTGAGTTGAAAGAATGTGTTCTCATCTTACATGATTTGTATATGTCTAAAAGGGGAGCATGTTTTAAAGCTATTCGAAAGAAATATAGCCAACAAGAGGAGGAGCCTGATAATCCAGAGTTCGACCCCGAGTTGCAAAATGTGGCAAACCTTCCTTCGCCTTCTAAGTTACCAAGTTATTTGTTTGAAGTTGAAGTAGAGTTTCGACAAAAAAAATAA 888 0.3604 MFIRRRKRGNKMYKYLCSVEKEKKRRPKMDYMKILQKDITPHMRGQLIDWLAELADNYNLLPNVIYLAVSYIDRYLSFHPIRKVRLQLLGVTSMYIASKYEDLSTHNVETFSVTTCNYYDKEEVLEMENKILKTLDFDLSSPTIMTFLEKFEEIACEENNASSWKFKFLTEYLGELSLLEYECLKFLPSLVAASITLLAKFIVWPEKRPCWTSALEEYSEYSSFELKECVLILHDLYMSKRGACFKAIRKKYSQQEEEPDNPEFDPELQNVANLPSPSKLPSYLFEVEVEFRQKK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4478 295 SMART cyclin_7 146 235 IPR013763 -
Tpr7g4478 295 SMART cyclin_7 49 133 IPR013763 -
Tpr7g4478 295 Gene3D - 12 256 - -
Tpr7g4478 295 ProSitePatterns Cyclins signature. 44 75 IPR006671 -
Tpr7g4478 295 PIRSF Cyclin_A_B_D_E 9 259 IPR039361 -
Tpr7g4478 295 PANTHER CYCLIN-A3-1-RELATED 11 257 - -
Tpr7g4478 295 Pfam Cyclin, N-terminal domain 13 140 IPR006671 -
Tpr7g4478 295 Pfam Cyclin, C-terminal domain 142 256 IPR004367 -
Tpr7g4478 295 CDD CYCLIN 142 234 IPR013763 -
Tpr7g4478 295 SUPERFAMILY Cyclin-like 142 256 IPR036915 -
Tpr7g4478 295 PANTHER CYCLINS 11 257 IPR039361 -
Tpr7g4478 295 SUPERFAMILY Cyclin-like 18 139 IPR036915 -
Tpr7g4478 295 SMART Cyclin_C_2 142 277 IPR004367 -
Tpr7g4478 295 CDD CYCLIN 43 132 IPR013763 -
Tpr7g4478 295 Gene3D - 25 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4478 Tpr-Chr7 53505156 53508407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4478 22 286 Core Cell Cycle Gene Families AT5G43080 47.547 2.07e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4478 K06627 - gmx:100776007 282.337