Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4464 ATGTCTCAAAGAATCGGAACAAAGCTATTTGTCAACAGGTTATCATTTCACACTACAAAACAAAGGTTCGAATCCTTGTTCTCACCATTCGGAGAAATTACAGAAGCTACACTTATAATTGACCCAAATACTCAAAGGCCTAAAGGTTTTGGTTTTGTTTCTTACAAATCTGAAATTCAAGCTGAAAAAGCTATCAAAGCATTGAATGGAAGGATAGTTGATGGAAGGATTATTTTTGTTGAACCTGCAAAACCGAAGGACTCGTGA 267 0.3596 MSQRIGTKLFVNRLSFHTTKQRFESLFSPFGEITEATLIIDPNTQRPKGFGFVSYKSEIQAEKAIKALNGRIVDGRIIFVEPAKPKDS* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4464 88 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 81 - -
Tpr7g4464 88 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 81 - -
Tpr7g4464 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Tpr7g4464 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Tpr7g4464 88 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
Tpr7g4464 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Tpr7g4464 88 Gene3D - 2 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4464 Tpr-Chr7 53404764 53406757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4464 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 42.105 2.78e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4464 K13195 - gmx:100781760 128.257