Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4449 ATGGATCAGATTAAGAAGAAATCAAAGCTTGGATCTACTACATTGGAGGTTGAAAAAAAGAAATCAAAAGTTGGATCAACTACAATGGAGGTTGAAAAAAAGAATTTACCGCAAGGATCTGTTTCAATGGAGGTTAACAAAAAGAATTCAACTAAAGGTTCTGTTTCAGTGGATGTTAACAAAAAGAAGAAACTAACTGCTGAACCTATTGAACATCAAGAGATATCTCAAGAGACGCAAATGGATCATGACACCAAGATATCTCAGGTGACTGAAATCAACGATGGCATAAAGGTTTTGGCAGAAAACCAAGAGTTTGTTCATAATGTACCTCAGAAATCTCAAGATACCCAAATGCTTCAAGACAATAAGGAAAAGAAGCCTATTGAGTATGATTATGATTCTGTTAAAGATGTTACCAAGAAGAAAGAAATATGGAGACTAGGGGTGATTTTGGATGACATGTGGATCGTGTCGAAAGGAGAATCTGAAGTGACAATGGAAATGTTGCTCAGGGATATAAAGGGATATACTATCCAAGCGACTGTGATGACTGATGATATTGAGAAGTGGAAAGAACAACTTGCACAAGGGCAGACGTATTATATGCGTAATTTTAGGGTTGCAGATAATGATTCACAATATAAGATGACTCCTCACAAATTTCGATTAATATTTGTTGGTGCAACAAGAGTTAATGCAGTTGAAATTCCAGAAATACCAAAAACACATTTTTACTTCAAGGATTTTGAAGAGATCTCTAATGGGACTTTTCGGACTGATCTGTTAATTGATGCTATAGGAGTTGTTAACTCTATTGGGAAGATTGTTACTGCAACTACAACAAGGAAAGCTAATGTCGCTTTTACCATCAAAGATCAGCGTGATAAGGAAATTGATTGTACTCTGTGGGATTTAGTATCTGAACAATTCATCAATGGTTACAACCAACGATCTAATAATGATCATTGTGTCATCATTATGAGACATGTTCGAGTCAGAGAAGCACAAGGATCATACCCCTTGCAATTAACAAATGTGTGGAATGGAACTAAAATTCTATTTGATACATCGATACCGGAAATAGAAAAATTTCGTGCCAGCTTGCCCAAGGAAACTGTTTATGCGTCGCAAAACAGGTCCTTTTCAACTTCTACACAATTATACACCCAGAGTTATGCTGGTACTCAATACAATACTGATGAAAACTTCATGAGAAATGCCCAAGTTCTTTCATTGGGAGCTATGAAAAAACTTAAAAAGGATGCAGTTTGCGTTACTGTAGTAAGCACTTCACACATTAGGGTGTCAAATGGAGGTTGGTTTTTTTATGCTTGCAATGATGGTAGAAATGACTGCTCTTTAAAATGTGAAGGATCTGAACTCCCCTTTGTATGCCGAAAGTCTCACACCACAAATGATCCTAGAGTCAAGTACAAGTTGGATGTTGAAGTATACGATGGTGACGATACAGCCAAGTTTGTTTTTTGGGACAATACTCTTGATGAGATGGTTGGCCTCACTGCAAAGACTCTACTTGAACAAGAAAAGAAGAATGGTTACGGAGACCAGCAGGAATATCCTCGCCATTTTGATGCTATCATGGAACGAAAATTTGCTTTTAGAGTTAAGTGGCAAATTGGATGGGGTGGGATGGGATCTGTTGTCATGTGTAAGGATAGTCCAGATTTGATTGCCAAAATTCAGGAACAACTTCCTGTTGCAGAGAGTACATTCAAAGACGTTGAAACCATCAATATAATTGAGGAAGAACTTTGTGTAATACCTCAATCACCTACGATTCAGGCTTTTACAAAAGACGATATTGAAAAATTTGCTCACCTAGATGATGGAATTCTATCAACACCAAATGTTTCAGCTTCATCAGAGAATGATATCTCTCCTTCTTCTCAAAAGACTCCAGCCAAAAGGACTGCTGCAAAGGAACAACCAGTTGATTCTCTCAATCTTGATTGTCAGGCTTCATCAACAAGATCTGGCAAACTGATTAAAAAAGAGAAAATTTAA 2028 0.3713 MDQIKKKSKLGSTTLEVEKKKSKVGSTTMEVEKKNLPQGSVSMEVNKKNSTKGSVSVDVNKKKKLTAEPIEHQEISQETQMDHDTKISQVTEINDGIKVLAENQEFVHNVPQKSQDTQMLQDNKEKKPIEYDYDSVKDVTKKKEIWRLGVILDDMWIVSKGESEVTMEMLLRDIKGYTIQATVMTDDIEKWKEQLAQGQTYYMRNFRVADNDSQYKMTPHKFRLIFVGATRVNAVEIPEIPKTHFYFKDFEEISNGTFRTDLLIDAIGVVNSIGKIVTATTTRKANVAFTIKDQRDKEIDCTLWDLVSEQFINGYNQRSNNDHCVIIMRHVRVREAQGSYPLQLTNVWNGTKILFDTSIPEIEKFRASLPKETVYASQNRSFSTSTQLYTQSYAGTQYNTDENFMRNAQVLSLGAMKKLKKDAVCVTVVSTSHIRVSNGGWFFYACNDGRNDCSLKCEGSELPFVCRKSHTTNDPRVKYKLDVEVYDGDDTAKFVFWDNTLDEMVGLTAKTLLEQEKKNGYGDQQEYPRHFDAIMERKFAFRVKWQIGWGGMGSVVMCKDSPDLIAKIQEQLPVAESTFKDVETINIIEEELCVIPQSPTIQAFTKDDIEKFAHLDDGILSTPNVSASSENDISPSSQKTPAKRTAAKEQPVDSLNLDCQASSTRSGKLIKKEKI* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4449 675 MobiDBLite consensus disorder prediction 624 658 - -
Tpr7g4449 675 Gene3D - 132 234 IPR012340 -
Tpr7g4449 675 CDD RPA1_DBD_A_like 147 232 - -
Tpr7g4449 675 Gene3D - 390 549 IPR012340 -
Tpr7g4449 675 MobiDBLite consensus disorder prediction 1 28 - -
Tpr7g4449 675 MobiDBLite consensus disorder prediction 1 60 - -
Tpr7g4449 675 SUPERFAMILY Nucleic acid-binding proteins 420 547 IPR012340 -
Tpr7g4449 675 MobiDBLite consensus disorder prediction 29 56 - -
Tpr7g4449 675 SUPERFAMILY Nucleic acid-binding proteins 245 376 IPR012340 -
Tpr7g4449 675 PANTHER NUCLEIC ACID-BINDING, OB-FOLD PROTEIN-RELATED 150 513 - -
Tpr7g4449 675 MobiDBLite consensus disorder prediction 624 644 - -
Tpr7g4449 675 CDD RPA1_DBD_B_like 265 370 - -
Tpr7g4449 675 SUPERFAMILY Nucleic acid-binding proteins 131 234 IPR012340 -
Tpr7g4449 675 Gene3D - 239 378 IPR012340 -
Tpr7g4449 675 Pfam Domain of unknown function DUF223 168 263 IPR003871 -
Tpr7g4449 675 PANTHER REPLICATION FACTOR A 1, RFA1 150 513 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4449 Tpr-Chr7 53298880 53303769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4449 171 544 Core DNA Replication Machinery Family AT5G45400 20.103 3.20e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4449 - - mtr:MTR_3g055660 280.411