Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4432 ATGTCACCAAGTTTCATCTTCGATCCTCCCAGTGACGAAGAAATCGAAGAATTATCCGAACACGAATCAGACGAAGAAGAATCAGAACAAGAATCACAATCAGAATCAGAAGGACGAGAATCAGAATCAGAAGATGAACGCATAGAGGAATCGCGAGTTTCCAAGAAGAATACAGTGTCTCCATGGGACTTCACAAAATACTCTGAATCAGTTGTTGAAGAACACGCTCGCAGAAGTACAACTTCAGTAGACGATAAAATCTATGCCGTCAGAAAACGTTCAGCGCCGGTTGTTCCTTTGCCTGACTCCGACGATGATAGTGGCTCTGACGCCGAAGCCGATAAACATGAAGATTATAGATCAGAAGAAGAAGATGAAGACAAGGGTAATGCTGGCGACAAAAAGTCCTTTTTTGCTCCTTCTGATGGAACATCTTTCAGTGCTGATTCGTTCTTGCAACTCAATTTGTCTCGTCCTTTACTCAGGGCTTGTGAGGCCTTGACTTTTACTAAACCAACACCAATTCAGGCGGCTTGCATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACTGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTACCGTCCCAAACGCATGAATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCTCAGTATGATTGAGCAGCTTGCTCGTTTTACTGATATAAGGGGGTGCCTGGCTGTTGGTGGTATGCCAATAAAGGAGCAAGAGGCTGCCTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGGCGCATGATAGATCATTTACGCAATTCTATGTCAGTGGATTTGGATGATCTTTCTGTTTTGATCCTTGATGAAGCAGATCGTCTTTTGGAGCTGGGGTTTAGTGCTGAAATTCAGGAAATTGTTCGATTGTGTCCCAAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACTGAGGAGGTTAATGATCTTATTAAACTTTCCCTATCAAAACCCCTACGTCTTTCTGCTGATCCATCTGCAAAACGGCCAACATCCTTGACTGAGGAGGTGGTTAGATTAAGAAACATGCGTGAATCGAATCCGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTCACTTCAAAAGTTATCATTTTCAGTGGAACCAAGCAAACTGCACATAGGTTGAGGATTATATTTGGATTAGCTGGATTGAAAGTTGCTGAGTTTCATGGAAATCTTACTCAGGCCCAACGTCTTGATGCTTTGAACCAATTCAGGATGCAGCAAGTGGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATTATTGGTGTTCAAACAGTTATCAATTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGCAGGAGCTGCTATTACATTTGTTACCGAACGTGACCGATCACTTTTGAAAGCTATTATAAAGAGGGCTGGTTCAAAGCTGAGAAAACGCACTGTTGCTGAGCAATCTATATTAAAATGGTCTAAAACAATTGAGCAAATGGAGGATCAGATTTCTGAAGTACTTGAAGAAGAGAGGGAAGAAAGGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTAAACATAGGGGAGATATCTACTCCCGCCCGAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCGGCAAAAGCAGCAAAGGCATCCTTGGATAAGGAAGACGGTCCTTCTCATAAGGTGGTTAGTGCCCAGCAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAGCGGGAACGAGAGAAAAATATGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGACGAGCAAGATGACAAACCAAGAGGTAAGGGGACAGATAATGAAAAGGCTGGATTGACACTTGCTGATCTTGCTTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCACTAGACTCTGGCAAGATTGTGAAGAAGCCTCAAAAGAAGTCTAATAAATCTAATCCTTCGCGAAAGCCTTCCTCTTCAAGGACAGAAGACATGCGGGAGCAATTCCAAAATGACATGAAGGATAAAAAGCCAAAACAGAAAGGTTCTGGAATAGGAAAGAAGGCAAAGAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2271 0.4346 MSPSFIFDPPSDEEIEELSEHESDEEESEQESQSESEGRESESEDERIEESRVSKKNTVSPWDFTKYSESVVEEHARRSTTSVDDKIYAVRKRSAPVVPLPDSDDDSGSDAEADKHEDYRSEEEDEDKGNAGDKKSFFAPSDGTSFSADSFLQLNLSRPLLRACEALTFTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQVLSMIEQLARFTDIRGCLAVGGMPIKEQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQEIVRLCPKKRQTMLFSATMTEEVNDLIKLSLSKPLRLSADPSAKRPTSLTEEVVRLRNMRESNPEAVLLAMCSKTFTSKVIIFSGTKQTAHRLRIIFGLAGLKVAEFHGNLTQAQRLDALNQFRMQQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGAAITFVTERDRSLLKAIIKRAGSKLRKRTVAEQSILKWSKTIEQMEDQISEVLEEEREERILRKAEMEATKAENMIKHRGDIYSRPKRTWFVTEKEKKLSAKAAKASLDKEDGPSHKVVSAQQAEDLKLKEKRKREREKNMPRKKRRKLEAAREMLEDDEQDDKPRGKGTDNEKAGLTLADLAYRRAKAVKATKRALDSGKIVKKPQKKSNKSNPSRKPSSSRTEDMREQFQNDMKDKKPKQKGSGIGKKAKKSFKSKSRYKRK* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4432 756 MobiDBLite consensus disorder prediction 737 756 - -
Tpr7g4432 756 Gene3D - 365 568 IPR027417 -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 109 133 - -
Tpr7g4432 756 SMART helicmild6 404 489 IPR001650 -
Tpr7g4432 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 528 IPR001650 -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 679 697 - -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 64 83 - -
Tpr7g4432 756 Coils Coil 11 31 - -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 597 756 - -
Tpr7g4432 756 Pfam Helicase conserved C-terminal domain 387 489 IPR001650 -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 68 83 - -
Tpr7g4432 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 354 IPR014001 -
Tpr7g4432 756 Coils Coil 527 567 - -
Tpr7g4432 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 511 IPR027417 -
Tpr7g4432 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 300 308 IPR000629 -
Tpr7g4432 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Tpr7g4432 756 MobiDBLite consensus disorder prediction 34 56 - -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 635 663 - -
Tpr7g4432 756 PANTHER BNAA01G17110D PROTEIN 305 721 - -
Tpr7g4432 756 PANTHER BNAA01G17110D PROTEIN 52 280 - -
Tpr7g4432 756 CDD SF2_C_DEAD 366 483 - -
Tpr7g4432 756 CDD DEADc_DDX27 160 355 - -
Tpr7g4432 756 Coils Coil 613 633 - -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 10 33 - -
Tpr7g4432 756 Gene3D - 110 357 IPR027417 -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 711 736 - -
Tpr7g4432 756 MobiDBLite consensus disorder prediction 94 134 - -
Tpr7g4432 756 PANTHER RNA HELICASE 52 280 - -
Tpr7g4432 756 PANTHER RNA HELICASE 305 721 - -
Tpr7g4432 756 SMART ultradead3 168 369 IPR014001 -
Tpr7g4432 756 Pfam DEAD/DEAH box helicase 173 343 IPR011545 GO:0003676|GO:0005524
Tpr7g4432 756 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4432 Tpr-Chr7 53114417 53122992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4432 137 506 Eukaryotic Initiation Factors Gene Family AT3G13920 34.048 2.53e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4432 K13181 - gmx:100776684 934.48