Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4419 ATGGTTTCTGAAGCCAGCAAGAAGAAGGCTGCACAGAAGAAGGCCGCCGCTGCCGCAAAGAGAGGAGCCAAAGTACCTGCTTCCGCTGCTTCATCGAAAACCGCGTCGGATAAGGCAGTGGACAGTGTTTCCAACGGAATTGGGGAGATTCAGATATCTGATCGGACATGCACCGGTGTCCTATGTTCTCATCCTCTTTCTAGGGATATTCGGATAGAATCTCTATCAGTTACTTTCCATGGACATGATCTTATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTGAATGGTTGTGGAAAATCTACCCTACTTACAGCAATAGGTCTCCGTGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGATGAGGAAAGGTTGAAGTTGGAGAAAGAAGCTGAAATTCTGGGAGCACAAGATGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGCGATTTTTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCCCTGTTTATGAACCCAACCATTCTTCTACTTGATGAACCAACTAATCACCTTGATTTGGAAGCATGTGTGTGGCTCGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTAATTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCATATGCAAACCAAAAAGCTGAAGTTCTATACCGGTAATTATGATCAATATGTCCAGACACGTGCTGAACTGGAAGAGAATCAGATGAAGCAGTATAGATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCACGTTTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCTGTCCTCCAGTTTGTGGAGGTGACATTTGGTTACACTCCTGAGAATCTCATCTACAAGAACATCGACTTTGGGGTCGATTTAGACTCGAGGATTGCTTTGGTTGGACCCAATGGAGCTGGGAAGAGCACATTCCTGAAACTTATGACAGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAATCACCTTCGTATTGCACAGTTTCACCAACACTTGACTGAAAAGCTGGACTTGGAACTGTCTGCTCTCCAATTTATGATTAAAGAATACCCTGGAAATGAGGAAGAGAGGATGAGAGCAGCTATTGGAAAGTTCGGTTTATCGGGTAAAGCGCAGGTGATGCCTATGAGAAATTTATCCGATGGACAAAGGAGCCGTGTGATCTTTGCATGGTTAGCCTACAGACAGCCTCACTTGCTACTATTAGATGAGCCAACTAATCATTTAGATATCGAGACAATCGACTCGTTAGCCGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTGTGTGCTGATCAAACAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGCAGCATCTAAAGGCAAAGGCAGGTTTAGCTGATTGA 1791 0.4444 MVSEASKKKAAQKKAAAAAKRGAKVPASAASSKTASDKAVDSVSNGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGLRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLKLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQTKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4419 596 Gene3D - 70 334 IPR027417 -
Tpr7g4419 596 MobiDBLite consensus disorder prediction 1 35 - -
Tpr7g4419 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 312 IPR027417 -
Tpr7g4419 596 Pfam ABC transporter 281 353 IPR032781 -
Tpr7g4419 596 SMART AAA_5 94 296 IPR003593 -
Tpr7g4419 596 SMART AAA_5 406 594 IPR003593 -
Tpr7g4419 596 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524
Tpr7g4419 596 Gene3D - 357 594 IPR027417 -
Tpr7g4419 596 PANTHER - 1 596 - -
Tpr7g4419 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 596 IPR003439 GO:0005524
Tpr7g4419 596 CDD ABCF_EF-3 381 573 - -
Tpr7g4419 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 575 IPR027417 -
Tpr7g4419 596 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 596 - -
Tpr7g4419 596 CDD ABCF_EF-3 70 287 - -
Tpr7g4419 596 Pfam ABC transporter 397 528 IPR003439 GO:0005524
Tpr7g4419 596 Pfam ABC transporter 88 242 IPR003439 GO:0005524
Tpr7g4419 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 310 IPR003439 GO:0005524
Tpr7g4419 596 Coils Coil 288 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4419 Tpr-Chr7 52979221 52983272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4419 381 574 Calmodulin-binding Proteins AT2G36910 25.877 3.91e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4419 K06185 - gmx:100785099 1066.22