Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4404 ATGCAGGATCTTTTTCAAGTTAGAAATGCCAATTATTCATCACCAGAAATCTCCAACTTCTTAATTACTTCAAATCCTTTGGAGTATCAAGAACTAGGTGCAAGTACAGCAGAACCAAATAGGTTAATAATGCATCAGCATCATCAGCAACACTATGGTTCATTTCCTCATTCTCCTCAACACAAACAACAGTACTGTTCTGAGCTTATAAGTGATTTTGGAAATTGTAGAAACAGAACTGTTCCACATCAAGTCATTGTCACTGATTGGCTTCTAAATGGTGAAATGCATCAGAATCATTCCCTGCAAGATATTGTCAATAATAGGCCAGACTCAAACATGGCATCACTCATGCATCATAATGCAGGTCAAGGAAATTGTGTAGGAAATGCTTCTGAAAGTGAACTTCAACAAAATCACTTAAATTTTGGATGGAAAAATCAAACTGATTCAAATAAGCAAAGCTTATCATTATCACTTTCGTCAAATGTTTCTAAAAACAAGGCTTATAATGTTTCTCAGTTTGATCAAGTGGGAACTTCAACTTCAAGAGATGAATTTCAAACTATGAAGTATGTGAAGCCTTCAATCATTTCTAAAGATTGTGGAAAATCACTTCAAGACATGGTAGTTGGAATGATACCAAATTCAAAGATTAGTACTGTTGGTCCACTTGGTCCTTTTACTGGTTATGCTACTGTTCTTAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTAGATGAGTTTTGTTCAAAATTTGTGACAACTTATGATGTTTTAGAAACTGAGTTTGCTTCTAAAGGAAGTAATTATTCATGTTCTTCATCATCTATGTTTCATAGTGCTGATTTGGTGGCTAGAAGTAACTTTGGTGTTTCTATGAGACCAGATTATCAACAGATTAAAACTAAGCTTATGTGCATGCAAGAGGAGGTCAGCAGGCGATACAAGCAGTACCATCAACAAATGCAAATGGTTTTTGTATCATTTGAATCAGTAGCAGGTCTTAATTCAGCTACTCCTTACATCACCTTAGCTATGAAGTCAGTATCAAAACACTTCAAGAGCTTAAACAATGCTATTTCAAATCAGCTTAAACTTATAAGCGAAGTCTTGCGAAATGATTCATCGATACCAACCACAAACAACAGTAGCAAACTAATTGACACTAATGTGGCAAGCCTAAAGTGCGTGGACCAAAACCTACAAAAGAACAAACCTGACAAGGGTCCAGCAGGTTTTCATGATCCACAACTACAGCATGTTTGGAGGCCTCAAAGAGGTTTTCCCGAACGTGCAGTGGGGATCCTTAAAGCTTGGTTGTTTGAGCATTTTCTTCATCCTTATCCAACAGACATTGACAAACACATGTTGGCCACTCAGACAGGACTTTCGCGAAACCAGGTATCGAATTGGTTTATCAATGCTCGAGTTCGTGTGTGGAAGCCGATGGTTGAGGAAGTACACATGCTTGATAAAAAAACAACAGATACCGGTGAGAGTTCCAGTCCAAACGAGGGAACTTTTGGCACTGTAGGTAGTTCTAACCAGCTCCGAATGGATAAGGCATCAAACAAGTACGTTATGCAATCAATACCTGAAGACCAAATTCAATATATGGAATTTGGTTCAATATCTATAGATACAAATGCAGAGGAAAATGAAGCGGAACAATGGAGACAAGAGAAGCGGTCGAAATTGGAATGCGGAATGAGTTCAAGAATGGATGGAACATTGATGGATTTTTTACCATATAGACATAGTGGACATGATGTTGTGCAATCACTTGGATTGGATCTGTTTCATTGA 1815 0.373 MQDLFQVRNANYSSPEISNFLITSNPLEYQELGASTAEPNRLIMHQHHQQHYGSFPHSPQHKQQYCSELISDFGNCRNRTVPHQVIVTDWLLNGEMHQNHSLQDIVNNRPDSNMASLMHHNAGQGNCVGNASESELQQNHLNFGWKNQTDSNKQSLSLSLSSNVSKNKAYNVSQFDQVGTSTSRDEFQTMKYVKPSIISKDCGKSLQDMVVGMIPNSKISTVGPLGPFTGYATVLKNSRFLKIAQNLLDEFCSKFVTTYDVLETEFASKGSNYSCSSSSMFHSADLVARSNFGVSMRPDYQQIKTKLMCMQEEVSRRYKQYHQQMQMVFVSFESVAGLNSATPYITLAMKSVSKHFKSLNNAISNQLKLISEVLRNDSSIPTTNNSSKLIDTNVASLKCVDQNLQKNKPDKGPAGFHDPQLQHVWRPQRGFPERAVGILKAWLFEHFLHPYPTDIDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEVHMLDKKTTDTGESSSPNEGTFGTVGSSNQLRMDKASNKYVMQSIPEDQIQYMEFGSISIDTNAEENEAEQWRQEKRSKLECGMSSRMDGTLMDFLPYRHSGHDVVQSLGLDLFH* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4404 604 SMART HOX_1 425 489 IPR001356 GO:0003677
Tpr7g4404 604 MobiDBLite consensus disorder prediction 495 514 - -
Tpr7g4404 604 SMART prehox3 229 365 IPR006563 -
Tpr7g4404 604 Pfam Associated with HOX 234 364 IPR006563 -
Tpr7g4404 604 Gene3D - 428 490 - -
Tpr7g4404 604 Pfam Homeobox KN domain 442 481 IPR008422 GO:0003677|GO:0006355
Tpr7g4404 604 CDD homeodomain 425 486 IPR001356 GO:0003677
Tpr7g4404 604 ProSiteProfiles 'Homeobox' domain profile. 422 485 IPR001356 GO:0003677
Tpr7g4404 604 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 600 - -
Tpr7g4404 604 SUPERFAMILY Homeodomain-like 426 490 IPR009057 -
Tpr7g4404 604 MobiDBLite consensus disorder prediction 499 514 - -
Tpr7g4404 604 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 51 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4404 Tpr-Chr7 52839179 52843517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4404 193 494 Homeobox Transcription Factor Family AT5G02030 44.839 9.55e-71 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr7g4404 POX 6.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4404 - - mtr:MTR_2g095050 769.615