Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4401 ATGGAAAACAAATGGCGAAAACTCAAACTCGCTCTCGGCTTCAATTCATGTCTTCATCTTCCTAAAACAACCGATCAAATTCCTCCTTCTTCCTCCTCCGTAACTAACTTCTCCGATCGCCTTTCAAATTCCTCCGATGTTTCCGTTCACCGTTCTTCCACTCCGACACCGACTTCCTCCACTCTCCGTCTCTCCTCATCCTCTTCCTCCTCCTCCTCCAAGGGAGTGTGTGCAATATGCTTGAACACAATGAAACCAGGGCAGCGGCAGGCCATTTTTACTGCAGAATGTTCTCACGCTTTCCATTTCCAATGCATCACATCCAATGTAAGATACGGGAATCAGATTTGCCCTGTTTGCAGAGCAAAATGGAAAGAAGTTCCTTTTCAGACTACTGCATCTAATGCCTCCAATGAAATCTCTCGACCAAGAGGTGACACCTGGGGAGGTATACTGCGGAGAATTTCTTCCTCACGACAAAATGGTACAGTTCGGCAGAGTTCGTCACGTCATAATATAACAGAACAAGCTCTCTTTGATGATGATGATGAAATCTTGGTGGATCAACAAACTTCAATTACTCACCATGTTAATGATGTTGATCATAGCATAGGAAATAAAATGGAGATCACAACATATCCTGAAGTTTCAGCTGTTCCAAAATCAGACTCTCATGATAACTTTACTGTATTGGTTCATCTTAAGGCTCCTCCTCATTCCAAAACACAAAACAGTGACAGGAGCAACGTTGAATCTTCACTCGAGACCTCTCGTGCTCCAATTGATCTTGTCACAGTTCTTGACATAAGTGGTAGCATGACAGGTTCAAAGATTGCATTACTAAAACGAGCAATGAGTTTTGTCATACAGAATCTAAGTTCCTCAGATCGTCTTTCTATCATTGTGTTCTCCTCAACAGCCCGTCGCATCTTCCCTCTACGACGGATGAATGATGCTGCACAACAGCAGGCATTGCGTGCAGTTAACTCTTTAGTTCCAAATGGTGGAACGGATATTGCTGAAGGATTGAAGAAAGGGGTCAGGGTGTTTGTTGACCGTCGGTGGAAGAATCCAGTGGGAGGCATCATGTTACTAACTGATGGACAGGATACCCATAATATTTGTGCCACGGCTCCTATTGGAGAAGGTTACCGATCACTTGTCCCGAACTCCATTCATCGTAATAATAGTCAAGGTTTGAAAATACCAGTGCATGCATTTGGTTTCGGTGTTGATCATGATGCTGATTTGATGAATTCCATCTCTGAGATTTCTGGAGGCACATTTTCCTTTATCGAAGCTGAAAACGTGATTCAGGATGCATTCGCTCAGTGTATTGGGGGACTATTGAGTGTGGTGGTTCAAGACCTACATGTAGAAGTTCGGTGTGCTCAGTCCCGTTTGCAACTTAGTTCAGTAAAAGCAGGAAGTTACCAAAGTACATTAACTAACAATGCAAGAATGGCTTCTATACAGGTAGGAGATTTGTATGCTGAAGAAGAAAGAGATTTTTTAGTGACTCTCAATGTTCCAGTTGAGAAATCTAGTGATGAGATGTCATTGTTGATAGTTACATGTCTTTATAGTGACCCCATCACAAAAATCGAGGGTTTGGATGTAACAAGTGAAGTGAAGATTCAGAGACCTAATGTTGTTATTGATCCAGTTGTATCAATAGAAGTAGATAGACAAAGGAATAGACTTCAAGCTACTGAGGCAATGGCTGAGGCTAGAGTCAAAGCAGAACGTGGTGATTTTACTACTGCAATTTCTGTCCTTGAAAGATGTCATAGGGGATTATCTGAAACTATTTCTGCTCAAGCTGGCGATCTGTTATGTGTTTCTCTTTCTGCTGAACTAAAGGAGATGCAAGAGAGAATGGCAACTCGACGAGTTTATGAAGAATCTGGAAGAGCTTATGTATTATCAGGGTTGAGCTCTCATTTATTGCAAAGAGCAACTGCAAGAGGTGATTCAACCGACTCCACCAGCTTTGTCCGTGCATACCAAACTCCTTCCATGGCTGAAATGGTTTCACGTTCCCAAACCTTTGTTATGAGTACTCCACAATCTGAAAATATTCTACGACCTACTAAATCCTTTAACGGCCGGCAGAAAAGAAAATAA 2127 0.4222 MENKWRKLKLALGFNSCLHLPKTTDQIPPSSSSVTNFSDRLSNSSDVSVHRSSTPTPTSSTLRLSSSSSSSSSKGVCAICLNTMKPGQRQAIFTAECSHAFHFQCITSNVRYGNQICPVCRAKWKEVPFQTTASNASNEISRPRGDTWGGILRRISSSRQNGTVRQSSSRHNITEQALFDDDDEILVDQQTSITHHVNDVDHSIGNKMEITTYPEVSAVPKSDSHDNFTVLVHLKAPPHSKTQNSDRSNVESSLETSRAPIDLVTVLDISGSMTGSKIALLKRAMSFVIQNLSSSDRLSIIVFSSTARRIFPLRRMNDAAQQQALRAVNSLVPNGGTDIAEGLKKGVRVFVDRRWKNPVGGIMLLTDGQDTHNICATAPIGEGYRSLVPNSIHRNNSQGLKIPVHAFGFGVDHDADLMNSISEISGGTFSFIEAENVIQDAFAQCIGGLLSVVVQDLHVEVRCAQSRLQLSSVKAGSYQSTLTNNARMASIQVGDLYAEEERDFLVTLNVPVEKSSDEMSLLIVTCLYSDPITKIEGLDVTSEVKIQRPNVVIDPVVSIEVDRQRNRLQATEAMAEARVKAERGDFTTAISVLERCHRGLSETISAQAGDLLCVSLSAELKEMQERMATRRVYEESGRAYVLSGLSSHLLQRATARGDSTDSTSFVRAYQTPSMAEMVSRSQTFVMSTPQSENILRPTKSFNGRQKRK* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4401 708 SMART ring_2 77 120 IPR001841 -
Tpr7g4401 708 CDD vWA_C3HC4_type 261 433 - -
Tpr7g4401 708 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Tpr7g4401 708 SUPERFAMILY RING/U-box 70 127 - -
Tpr7g4401 708 SUPERFAMILY vWA-like 258 446 IPR036465 -
Tpr7g4401 708 Gene3D von Willebrand factor, type A domain 262 447 IPR036465 -
Tpr7g4401 708 MobiDBLite consensus disorder prediction 689 708 - -
Tpr7g4401 708 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 3 706 - -
Tpr7g4401 708 Pfam von Willebrand factor type A domain 262 443 IPR002035 -
Tpr7g4401 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 126 IPR013083 -
Tpr7g4401 708 MobiDBLite consensus disorder prediction 25 74 - -
Tpr7g4401 708 SMART VWA_4 260 442 IPR002035 -
Tpr7g4401 708 ProSiteProfiles VWFA domain profile. 262 446 IPR002035 -
Tpr7g4401 708 Pfam VWA / Hh protein intein-like 611 683 IPR032838 -
Tpr7g4401 708 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 706 - -
Tpr7g4401 708 CDD RING-H2 77 121 - -
Tpr7g4401 708 Pfam RING-like zinc finger 77 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4401 Tpr-Chr7 52786782 52791353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4401 64 131 C3H Transcription Factor Family AT2G35910 35.294 4.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4401 - - mtr:MTR_2g094930 1077