Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4392 ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAACGGTTTGGAGGATGAGGTTTTCGATGATGTTCTCCAGTTTTTTGATTTTCCATTGGAAGATGTAGAAACTAATCCTGCTGAAGAAGATTGGAGTGCTCTTGGAGAGCCGTGTTTTGATGTGTTTCCAGAGCCACCGGTAGGATTGTGTGCCAAACCCAAAATTGAGAATCCCCAACTTGGGAATGGCTTCTCTGCTCCGTGCAATGAGATCTCCCCAATGATAAAAGTGCCAAGAACTGCTGGACCAGCATATGGAAAAACTCTTCCCAACAATGGATCTTTCTTTGAAAAAAAAGTTGTGCTTCAATACAGCCCGGTTTCTGTTTTCGAAGGAAGTAGTGCTTCCTCAGGTGAGAATTCCAGCTTTGATCTGCCTGTGATCCCAGTAAAGCGTCCTCGAAGTAAACGCCGGCGTCCTTCAAGCTCAAATCCTGTATTCTCGCTTTCTTTCATTGCTAATCCATCGGCATTTCAAAAATATCTTAAGACACCTGCCTCCGACTCAGATTTAAACAGAGTAAAGAAACAAAGAAAAAAGGACGACTCTGTGCTCTCAGGTGATGCTGAGACAAAGAGATCCTCATCACAAGAATCAGCTATCATTAGAAAATGCACACACTGCGAGGTCACAAAGACTCCGCAATGGAGAGAGGGACCTAAAGGCCCAAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCTGGACGCCTCTATCCTGAATACCGTCCTGCAAACAGCCCTACTTATGTAGAATCAGTCCACTCAAACTGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCGTCAAAGAAGGTGTTAGGGGACGTTCTATGTTGGCTTCATCAACTCTTTCCGGAAATTCTGTAGGACAACAACATTCTCATGGATCTTATTGA 957 0.441 MPEDIPNMKDSWFFDKNFNGLEDEVFDDVLQFFDFPLEDVETNPAEEDWSALGEPCFDVFPEPPVGLCAKPKIENPQLGNGFSAPCNEISPMIKVPRTAGPAYGKTLPNNGSFFEKKVVLQYSPVSVFEGSSASSGENSSFDLPVIPVKRPRSKRRRPSSSNPVFSLSFIANPSAFQKYLKTPASDSDLNRVKKQRKKDDSVLSGDAETKRSSSQESAIIRKCTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGRLYPEYRPANSPTYVESVHSNCHKKVLEMRGVVVKEGVRGRSMLASSTLSGNSVGQQHSHGSY* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4392 318 CDD ZnF_GATA 222 269 IPR000679 GO:0006355|GO:0043565
Tpr7g4392 318 SMART GATA_3 217 267 IPR000679 GO:0006355|GO:0043565
Tpr7g4392 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 277 - -
Tpr7g4392 318 Gene3D - 219 268 IPR013088 GO:0006355|GO:0008270
Tpr7g4392 318 MobiDBLite consensus disorder prediction 187 215 - -
Tpr7g4392 318 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 28 286 - -
Tpr7g4392 318 MobiDBLite consensus disorder prediction 299 318 - -
Tpr7g4392 318 Pfam GATA zinc finger 223 256 IPR000679 GO:0006355|GO:0043565
Tpr7g4392 318 PANTHER GATA TRANSCRIPTION FACTOR 28 286 - -
Tpr7g4392 318 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355|GO:0043565
Tpr7g4392 318 MobiDBLite consensus disorder prediction 187 206 - -
Tpr7g4392 318 ProSiteProfiles GATA-type zinc finger domain profile. 221 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4392 Tpr-Chr7 52685740 52690100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4392 15 285 C2C2-Gata Transcription Factor Family AT1G08010 41.034 5.45e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr7g4392 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4392 - - aprc:113853859 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4392 7 52685740 52690100 Tpr4g1680 4 17346943 17354278 PCT